Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq55 87.8 2e-12 seq61 84.2 3e-11 seq41 84.2 3e-11 seq26 84.2 3e-11 seq6 84.2 3e-11 seq183 82.4 9e-11 seq127 82.4 9e-11 seq20 82.4 9e-11 seq10 82.4 9e-11 seq8 82.4 9e-11 >seq55 Length=277112 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/89 (83%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 60043 AATTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTG 60102 ||||||| || || |||| || ||||| | |||||||||||||||||||||| | |||| Sbjct 180711 AATTAACATTGATAAAAA--TTACTCCTAGCCAGGGAATCGAACCCTGGTCTCGCACGTG 180768 Query 60103 ACAGGCGGACATACT-CACCACTATACTA 60130 ||||||| ||||| |||||||||||| Sbjct 180769 ACAGGCGCGGATACTGGACCACTATACTA 180797 >seq61 Length=221158 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| | |||||||||||||||||||||| | ||||||||||| |||| Sbjct 48369 AAAAAGATACTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGATAC 48428 Query 60117 TCACCACTATACTA 60130 |||||||||||||| Sbjct 48429 TCACCACTATACTA 48442 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| | |||||||||||||||||||||| | ||||||||||| |||| Sbjct 109850 AAAAAGATACTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGATAC 109909 Query 60117 TCACCACTATACTA 60130 |||||||||||||| Sbjct 109910 TCACCACTATACTA 109923 >seq41 Length=345181 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| | |||||||||||||||||||||| | ||||||||||| |||| Sbjct 29677 AAAAAGATACTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGATAC 29618 Query 60117 TCACCACTATACTA 60130 |||||||||||||| Sbjct 29617 TCACCACTATACTA 29604 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| | |||||||||||||||||||||| | ||||||||||| |||| Sbjct 30585 AAAAAGATACTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGATAC 30526 Query 60117 TCACCACTATACTA 60130 |||||||||||||| Sbjct 30525 TCACCACTATACTA 30512 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| | |||||||||||||||||||||| | ||||||||||| |||| Sbjct 220265 AAAAAGATACTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGATAC 220206 Query 60117 TCACCACTATACTA 60130 |||||||||||||| Sbjct 220205 TCACCACTATACTA 220192 >seq26 Length=463526 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| | |||||||||||||||||||||| | ||||||||||| |||| Sbjct 97678 AAAAAGATACTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGATAC 97737 Query 60117 TCACCACTATACTA 60130 |||||||||||||| Sbjct 97738 TCACCACTATACTA 97751 >seq6 Length=947499 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| | |||||||||||||||||||||| | ||||||||||| |||| Sbjct 234878 AAAAAGATACTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGATAC 234937 Query 60117 TCACCACTATACTA 60130 |||||||||||||| Sbjct 234938 TCACCACTATACTA 234951 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | | | |||||||| | || ||||||||| || ||||| ||| Sbjct 442411 TCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACT 442470 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 | ||| | | | || || | ||||| || || || || |||| || ||||| | || Sbjct 442471 TAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGG 442530 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCA 43134 | | |||||||| ||| || ||||| ||| | | | |||||| | ||| | Sbjct 442531 GATTCCTTCCTTGTCTTGGATCTTAGCTTTGA-CGTTGTCGATGGTGTCGGAAGCTTCGA 442589 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | ||||||||||| || || || ||||| || |||||||||||| Sbjct 442590 CTTCCAGGGTGATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCATT 442639 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | |||||||||||||||||||||| | ||||||||||| ||||||||||||| Sbjct 746741 CTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGATACTCACCACTA 746682 Query 60126 TACTA 60130 ||||| Sbjct 746681 TACTA 746677 >seq183 Length=20465 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| | |||||||||||||||||||||| | ||||||||||| ||||| Sbjct 19488 AAAAAGTACTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGATACT 19547 Query 60118 CACCACTATACTA 60130 ||||||||||||| Sbjct 19548 CACCACTATACTA 19560 >seq127 Length=50404 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| | |||||||||||||||||||||| | ||||||||||| ||||| Sbjct 311 AAAAAATACTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGATACT 370 Query 60118 CACCACTATACTA 60130 ||||||||||||| Sbjct 371 CACCACTATACTA 383 >seq20 Length=557278 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| | |||||||||||||||||||||| | ||||||||||| ||||| Sbjct 401882 AAAAAATACTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGATACT 401823 Query 60118 CACCACTATACTA 60130 ||||||||||||| Sbjct 401822 CACCACTATACTA 401810 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| | |||||||||||||||||||||| | ||||||||||| ||||| Sbjct 403482 AAAAAATACTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGATACT 403423 Query 60118 CACCACTATACTA 60130 ||||||||||||| Sbjct 403422 CACCACTATACTA 403410 >seq10 Length=723308 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| | |||||||||||||||||||||| | ||||||||||| ||||| Sbjct 473527 AAAAAATACTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGATACT 473586 Query 60118 CACCACTATACTA 60130 ||||||||||||| Sbjct 473587 CACCACTATACTA 473599 >seq8 Length=763973 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/77 (84%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || |||||| |||| | |||||||||||||||||||||| | ||||||||||| | Sbjct 693432 ATCAAAAATA--CTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGA 693375 Query 60114 TACTCACCACTATACTA 60130 ||||||||||||||||| Sbjct 693374 TACTCACCACTATACTA 693358 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| | |||||||||||||||||||||| | ||||||||||| ||||| Sbjct 761823 AAAAAGTACTCCCAGCCAGGGAATCGAACCCTGGTCTCGCACGTGACAGGCGCGGATACT 761764 Query 60118 CACCACTATACTA 60130 ||||||||||||| Sbjct 761763 CACCACTATACTA 761751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814233423880