Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq32 116 6e-21 seq6 111 2e-19 >seq32 Length=411647 Score = 116 bits (128), Expect = 6e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||||||||| | ||||| || | ||||||||||| || || || || | Sbjct 326062 TTCCTCCTCTAAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGG 326003 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||||| | ||| || ||||||||||||||||| || |||||||| ||||| || | Sbjct 326002 ATAAGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGG 325943 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| || ||||| Sbjct 325942 GAATTCCTTCCTTGTCTTG 325924 >seq6 Length=947499 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| ||||| | ||||| || | ||| |||||||| ||||| || || | Sbjct 442866 TTCCTCCTCTGAGTCTAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATATTGTAGTCGG 442925 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | || ||| |||||||| ||||||||||| || | |||||| || || |||| Sbjct 442926 AGAGGGTACGGCCATCTTCTAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGGTCTGGAG 442985 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| || ||||| Sbjct 442986 GAATTCCTTCCTTGTCTTG 443004 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| | |||||||| || || ||||| || || || || |||||| Sbjct 441956 CCACCACGAAGTCTCAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGAA 442015 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | || || ||||| ||||| ||||| || | ||||||||| || ||||| Sbjct 442016 AGAGTACGTCCGTCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGG 442075 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| || ||||| Sbjct 442076 ATTCCTTCCTTGTCTTG 442092 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | | ||| || |||||||| | ||| || || || || || || || Sbjct 442182 TTCCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCAC 442241 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | |||||| | ||| |||||||| ||||| ||||| || | |||||| || || |||| Sbjct 442242 TTAAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAG 442301 Query 146169 GAATTCCTTCTTTATCTTG 146187 | ||||||||||| ||||| Sbjct 442302 GGATTCCTTCTTTGTCTTG 442320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743522022488320