Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq30 104 2e-17 >seq30 Length=447140 Score = 104 bits (114), Expect = 2e-17 Identities = 469/731 (64%), Gaps = 22/731 (3%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 || |||||||||| | ||||| |||| |||||||| ||||| |||| || || ||||| Sbjct 100447 TTGTTGATATTCAGTTACTCTTCTTTCGAAGAAATTAGTTTTCCCTTGCAAGGAGATATT 100506 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG---CATCCCAATTCCAA 16059 ||||||||| |||||||||||||| | | |||||| | | | |||| || Sbjct 100507 TTCCATAAACTCAAAAGGATTTTT---AGTGTTGTATTTTTTGGGTAGTTCCAAGGTCAT 100563 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 | || ||| || || |||| || || || ||| | || |||||||| | Sbjct 100564 GAGTAGATGATCGGCAACGTATTCGATGTATTGAGACATAAGGTCGTGATTCATTCCGA- 100622 Query 16120 TAATTTAACA-GGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTT---CAA 16175 || | || || | | || || ||||| | ||||| || | ||| |||| ||| Sbjct 100623 GAAGAGAGCATGGTAGAGACTCCGTCAAAAATTCCTTTTCGATTTCAACGGCTTCGCCAA 100682 Query 16176 TGATT--ATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTAT 16233 | ||| ||| |||| | | || || || || | | |||| | Sbjct 100683 TAATTTGGTATATCTT--GGCGGGAGTT---GGTTTGTCATCTAGAAGGCGATACATGAG 100737 Query 16234 ACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGA-AAATGTAA 16292 ||| |||||||||| ||| | |||||||| || || ||||| || || | ||| Sbjct 100738 ACAGGCAAAATCACGATGGAGGCCTTCGTCTCTTGAAATCAACTCATTGGATTGACATAA 100797 Query 16293 GACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGA 16352 | || ||| | ||| | || ||||| || |||| |||||||| || ||||||| Sbjct 100798 ACCATGTAATTTG-CCTTTGCTCTTCATCCAGAAGATAGAAGCAAATGATCCGGAAAAGA 100856 Query 16353 ATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttacttt 16412 | || || || || || ||||| |||| ||||||| ||| | | || || | Sbjct 100857 AAATCCCCTCTACGGCTGCAAAAGCAATGCATCGCTCCCCGAAAGGAGCATCCTTGTCAT 100916 Query 16413 ctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCAT 16472 |||||||| |||||| | || |||| || | ||| |||||| | |||| Sbjct 100917 TAATCCATTTCAAAGCCCAGTCAGCCTTTTTCTTGATACATGGGTAGTTCTCCAAAGCAT 100976 Query 16473 TAAATAAATAAt-ttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531 |||| || | || |||| |||||| ||| ||| |||| || || || |||| Sbjct 100977 TAAACAACTTATCCTTTTCCTTTGC-ATCAGTAATGTAAGCCTCAATCAGCTTCGAATAC 101035 Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591 || || ||||| || || || || || || || | ||||| | ||| |||| Sbjct 101036 ATCTCAGAATGGATGTTTTCAATAAAGATTTGGAACCGGTAAAAATAGAGAGCCTCGGGC 101095 Query 16592 ATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCT 16651 |||| |||||| || | |||| || || |||| ||||| ||||| || Sbjct 101096 ATTTTAACTTCATCCATGAAGCGTTCTAGCAAATTGGCGTTGACTATGCCATCTGATGCA 101155 Query 16652 GCAAAAAACGC 16662 |||||||| || Sbjct 101156 GCAAAAAAAGC 101166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462509276960600