Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq30 127 2e-24 >seq30 Length=447140 Score = 127 bits (140), Expect = 2e-24 Identities = 480/739 (65%), Gaps = 28/739 (4%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 || |||||||||| | |||||| |||| ||||| |||||||| |||| || || ||||| Sbjct 100447 TTGTTGATATTCAGTTACTCTTCTTTCGAAGAAATTAGTTTTCCCTTGCAAGGAGATATT 100506 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATC-ACAACCTAGTTCTAATA 14030 ||||||||| ||||| |||||| | | | | ||| | || || || | | Sbjct 100507 TTCCATAAACTCAAAAGGATTTTTAGTGTTGTATTTTTTGGGTAGTTCCAAGGTC-ATGA 100565 Query 14031 GTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 14090 ||| ||| |||| | | || || ||||||||||| | || |||||| || | | Sbjct 100566 GTAGATGATCGGCAACGTATTCGATGTATTGAGACATAAGGTCGTGATTCATTCCGAGAA 100625 Query 14091 GTTTTACAGGAAT-TATA---TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTT 14146 | | || | || | | || |||||||| ||||| || || || ||| Sbjct 100626 G----AGAGCATGGTAGAGACTCCGTCAAAAATTCCTTTTCGATTTCAACGGCTTCGCCA 100681 Query 14147 ATAATAATCGTAATAATTTCATTAGAAGGAGGATATTT------TAGATGTTTAAAAATT 14200 ||||| | ||| | || || | |||| ||| |||| | | | || Sbjct 100682 ATAATT-TGGTA----TATC-TTGGCGGGAGTTGGTTTGTCATCTAGAAGGCGATACATG 100735 Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 | ||| |||||||||| ||| ||||| || ||||| ||| | || || || | Sbjct 100736 AGACAGGCAAAATCACGATGGAGGCCTTCGTCTCTTGAAATCAACTCATTGGATTGACAT 100795 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 || || | | ||| | || | ||| || || | ||| ||||||||||||||| Sbjct 100796 AAACCATGTAATTTGCCTTTGCTCTTCATCCAGAAGATAGAAGCAAATGATCCGGAAAAG 100855 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || ||||| || || ||||| || || |||| || || || | || | |||| Sbjct 100856 AAAATCCCCTCTACGGCTGCAAAAGCAATGCATCGCTCCCCGAAAGGAGCATCCTTGTCA 100915 Query 14381 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT-TCAATAGC 14439 |||||||| |||||| |||| ||||| || || | || | ||| || | ||| Sbjct 100916 TTAATCCATTTCAAAGCCCAGTCAGCCTTTTTCTTGAT-ACATGGGTAGTTCTCCAAAGC 100974 Query 14440 ATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14499 |||||| || | ||||| || || | | | |||||| | ||||| || ||| Sbjct 100975 ATTAAACAACTTATCCTTTTCCTTTGCATCAGTAATGTAAGCCTCAATCAGCTTCGAATA 101034 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14559 ||| ||||| || |||||||| ||| || || || | |||||| | ||| || | Sbjct 101035 CATCTCAGAATGGATGTTTTCAATAAAGATTTGGAACCGGTAAAAATAGAGAGCCTC-GG 101093 Query 14560 CCATTGTACCTCTGAGTAA--AATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617 |||| || || | | | || | ||| |||||| | || ||||| ||||| Sbjct 101094 GCATTTTAACT-TCATCCATGAAGCGTTCTAGCAAATTGGCGTTGACTATGCCATCTGAT 101152 Query 14618 GCTGCAAAAAATGCCAATA 14636 || |||||||| ||||||| Sbjct 101153 GCAGCAAAAAAAGCCAATA 101171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482342760190280