Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13 196 4e-45 seq108 190 2e-43 seq76 181 9e-41 seq30 145 7e-30 seq6 113 4e-20 seq32 104 2e-17 >seq13 Length=696343 Score = 196 bits (216), Expect = 4e-45 Identities = 950/1504 (63%), Gaps = 40/1504 (3%) Strand=Plus/Plus Query 22454 TTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGT 22513 || || | |||||| ||||| || || || ||| || || || ||||| | || Sbjct 649707 TTGACAATTTGAAAGTCGCCAGAAGTTACACGACGTGAATACATATTAGATGTATATGGC 649766 Query 22514 TCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAAC 22573 || | | |||||||||||| || || |||||||| ||||| || ||||| || || | Sbjct 649767 TCAATACTTTCATTGTTTCCAAGAATTTGAGCGGTTGAAGCTGTTGGCATAGGTGCAAGG 649826 Query 22574 AGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGA--CCAGTCCC 22631 || | || ||||| | || || || |||| | ||| ||| ||| |||||||| Sbjct 649827 AGCAAAGAATTTCTAACCCCATGTAATGCAATTCTTTCCTTAAGC--CGACCCCAGTCCC 649884 Query 22632 ACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCG 22691 | ||||| || || || ||||| |||||| || ||||||| | || | | | Sbjct 649885 AAAGATCCGATGGTGTAACATT---CCACATGTCATATTGCAGAATTCCTTTAGAAACAG 649941 Query 22692 GGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCA 22751 || || |||| ||| ||| || || | | |||| | ||| || || |||| Sbjct 649942 GGGAACCAGCGTAGGTTGAGTATGGTCCGTCGCTTTCGGCCAATTCACAAGATGCTTCCA 650001 Query 22752 ACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGC-GACGCTT 22810 ||| ||| | ||| || ||||| || ||||| ||||| || || || | || | Sbjct 650002 ACGAGCCATGATAGATTGTCTCAAATATTTTTTTGTTTAAATCCTTTGCATCAGAAG-AA 650060 Query 22811 TCGTACGGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGAT 22869 | | || ||| ||||| || ||| |||||||| | || || || || | ||| || Sbjct 650061 GCAAATGG-ATATTTCATCAACATGAAAGCGTCCGCTAATCCTTGGACACCCAAACCAAT 650119 Query 22870 CGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGAT 22929 |||| || ||||| || || | |||| | || | || || | || ||| || Sbjct 650120 AGGTCTGTGTTTCATGTTTGAATTTCTTGCTTGTGGGACCGGGTAATAGTTGACATCAAT 650179 Query 22930 TGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTA 22989 | | ||||||||||| || |||| ||| | || |||| || | Sbjct 650180 AACTTTATTCAAGTTTCTAGTTACAACTTTGGCTACTTCATGAAGTTTTACAAAATCAAA 650239 Query 22990 ---------AACGCC--CGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTG 23038 | |||| | | || |||| || ||||| | ||| || || || | ||| Sbjct 650240 TTTCCTTGTATCGCCGTCAACTG--CAACGAATTTGTTTAAGGCAATTGATGCCAAATTA 650297 Query 23039 CATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACAC 23098 || || || | ||| || || | ||| | |||||||| || || || ||| || Sbjct 650298 CAAACAGCAATCTCCTCGGGTGATGAGTATTGAACAATTTCAGTGCAGAGGTTGGAGCAT 650357 Query 23099 TTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATG 23158 || || || || | ||| || |||||||||| ||||| | |||||| | | ||| Sbjct 650358 TTAATAGTTCCAAGATTTTGTTGATTGCTTTTTCTGTTGCAGGCATCCTTAAACAAAATG 650417 Query 23159 TACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA------TAGTCTGA 23212 || || | || || || | || || | ||| | | | | | || | Sbjct 650418 TAAGGAGCTCCTGTTTCAATTTGATTTTCAACAATCTTTTTGAAAACTTCTCTTGCCTTA 650477 Query 23213 GCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAAT 23272 | ||||| ||| | | ||||| || | || || || || | || || ||| Sbjct 650478 ACTTGAAC---TCGAA---ATCTGCCCTCATTTTCATATCGTTCATAAAGTGCCTCGAAT 650531 Query 23273 TCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATT 23332 || ||| |||| || || | ||| || ||| || ||||| | | |||||| Sbjct 650532 TCTTGACCCCAACAATCAGCTAAGCCTGGACATTCGTGTGGGCACATCAAAGACCACATA 650591 Query 23333 GAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCG 23392 || ||||| | | ||||||| | ||| || | ||| | |||| |||| || Sbjct 650592 CCATCGGTTTCAGTTCTTTTCATAAACAAATCAGGGACCCACAACCCGTAAAACAAGTCA 650651 Query 23393 CGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCC 23452 || || || ||| | || |||||||| || |||||||| || || | || Sbjct 650652 CGTGCACGATTGCTGTCTGTTCCATCATTCTTTTTTAATTCCAAAAATTCAAATATATCA 650711 Query 23453 GCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCG 23512 |||||||| || || ||||||| |||||| || || ||||| ||||| || || || ||| Sbjct 650712 GCATGCCAGGGTTCAAGGTAAATGGCAAAAGCACCTGGTCTTTTATTACCTCCTTGGTCG 650771 Query 23513 ACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCG 23572 || || | || |||||||| | ||| ||||| || || | ||| || || ||| Sbjct 650772 ACATATCTTGCTGTGTTGTTAAATACTTGGAGCATTGGAACTAAACCATTAGAAACGC-- 650829 Query 23573 CCTACG--CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGC 23630 | | || || | | ||||| ||||||| |||||||| || ||||| | Sbjct 650830 CATTCGTTCCATTTATGGCAGTTCCTTTAGCTCGAATACAGTGAACGTTCAATCCTATTC 650889 Query 23631 CTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGC 23690 |||| |||||||||| || | || ||||| | ||||||| | || || | ||| Sbjct 650890 CTCCTGCCGATTTCGAAATTAAGGCACATTGAGATAAAGTGTCGAAAATTCCTTTGATTG 650949 Query 23691 TGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCG 23750 ||| || | | | ||||||||| ||||||| ||| | | || | || Sbjct 650950 AGTCTTCAGACATTGTCAACAAGAAACAAGAAGACAATTGAGGAGTTAAAGTTCCTGCGT 651009 Query 23751 AGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGA 23810 ||||| || || | ||||| ||||| || | ||||| |||| || || |||| Sbjct 651010 TAAACAGAGTAGGTGTAGCGTGGGTAAACCATTTTTGAGACATAAGATCATATGTTTCGA 651069 Query 23811 TGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAG 23870 | || ||||| || || | ||| || || || || || ||||| || ||| | Sbjct 651070 TTGCAGCATCTATATCGTTCATGTGAATTCCAATAGCAACACGCATTGACAAGTACCCTG 651129 Query 23871 GTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATC 23930 ||||||| || || |||||||| || | |||||| | || | |||||||| | Sbjct 651130 GTCTCTCAACAACTTTCCCATTAATTTTAAATAAATATGATCTTTCTAATGTTTTAAAAC 651189 Query 23931 CAAA 23934 | || Sbjct 651190 CGAA 651193 >seq108 Length=67188 Score = 190 bits (210), Expect = 2e-43 Identities = 1109/1773 (63%), Gaps = 32/1773 (2%) Strand=Plus/Minus Query 22255 CTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGAC--ATT 22312 ||| ||||| | ||||| ||||| || |||||| || ||| | | | ||| | | Sbjct 7114 CTGGTCGATGTAGGCTCCACGATCCGCTGCCATACCCATTAATT--CTCTTTGACTCAGT 7057 Query 22313 TCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACG 22372 || | || |||||||| |||| | | || || | || || |||||| | || | | Sbjct 7056 TCATACACAGTCTTGTAAAGTTCCTTAATATCCGAGGGAATTTCTTCGATATTTTGAATG 6997 Query 22373 GACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTC 22432 || || || ||| |||||| | |||| ||| ||| ||||||| | | | Sbjct 6996 GATCCATTGTTGGAGATGATCTTAGTTTTCATCTCATCCGTCCACAAGTCCAGTTCTACA 6937 Query 22433 AAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGG 22492 | ||| || | ||||| | || || | |||| | || || || | || ||||| | Sbjct 6936 AGATCCTTCAGAAGATGGCAATTTACGATTTGATAATCTCCTGATGATACACGGCGAGAG 6877 Query 22493 TAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAA 22552 || || || || ||| | ||||| | ||| |||||||||| || ||||| ||||| Sbjct 6876 TACATATTCGAAGTGTATGGTTCAATGCTTTCGTTGTTTCCCAAAATTTGAGCAGTCGAG 6817 Query 22553 GCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTC 22612 ||||||||||| || || || ||||| || ||||| | || || || | ||| || | Sbjct 6816 GCGGTCGGCATTGGAGCTAAGAGTAGTGAATTTCTTACTCCATGTTTAGCAATCTTTTCC 6757 Query 22613 TTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGC 22672 ||||| | |||||||||||| || ||||| || ||||| |||||||||||||||| Sbjct 6756 TTGAGTGCAGCCCAGTCCCACAGTTCAGACGGAGTGACATT---CCACATATCGTATTGC 6700 Query 22673 AACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCA 22732 || || || |||| |||||||| ||| || || |||| | | | || Sbjct 6699 AAAACTCCCTTTGAAACCGGTGATCCTTCGTAAGTTGAATAGGGCCCATCTTTTTCAGCT 6640 Query 22733 AGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAAT 22792 ||||| || || ||||| || || | || |||||||| ||||| || ||||| | Sbjct 6639 AGTTCACAAGAAGCTTCCAAAGCACCATGGTAAATAGTCTCAAAGATCTTTTTGTTGACA 6580 Query 22793 TCGGCGGCGGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCC 22852 || || || | | | || | | || || || ||| || || || | || Sbjct 6579 TCTTTCGCAGCATCAGAAGTGAATGGTAGTCTCAACAACATGAAAGCATCAGCTAATCCT 6520 Query 22853 TGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGA 22912 || || || | || || || | | | ||| ||| || | | || || || | || Sbjct 6519 TGGACCCCCAAGCCAATAGGCCTATGTCTCATATTTGAGTTTCTAGCTTCAGGGACTGGG 6460 Query 22913 TACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNN 22972 || |||| ||||| ||||||||||||| || | || || | | Sbjct 6459 TAGTAATTGACGTCGATGACCTTGTTCAAGTTTCTTGTAATAACCTTAGAAACACTGTGA 6400 Query 22973 NNNNNNTCAAAGTC---------GTAAACGCCCGATTGTACAACAAACTTGTTGACGGCG 23023 | | || | | || || || ||||| ||||| | || Sbjct 6399 AGTTTCTTGTAATCTATCGTCTTCTTTCCTCCTTCTTCAACCACAAATTTGTTTAATGCA 6340 Query 23024 ATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTA 23083 || || || | || || ||||| | || || || | ||| | ||| ||||| || Sbjct 6339 ATAGAAGCCAAGTTACAAACGGCAATTTCATCGGGCGAAGAGTATTGTACGATTTCTGTG 6280 Query 23084 CATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 || | |||| |||||||| || || | ||| ||||||||||||| ||||| | | Sbjct 6279 CACAAATTGGAGCACTTTATGGTTCCAAGATTCTGTTGGTTGCTTTTTCTGTTGCAAGCA 6220 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 || ||| | || ||||| ||| | || ||| | || | || |||||| || || Sbjct 6219 TCTTTGAATAGGATGTAAGGCATTCCAAGCTCCATTTGACATTCAATGATC-TTCTTCAA 6161 Query 23204 ATAGTCT-GAGCGTGAACACGTCGCACG-TACCTGCCTTCTTCCTCGTACTTTTGGTACA 23261 | ||| ||| | || | | || ||| | ||| || ||||| |||| Sbjct 6160 AATATCTCTAGCCTTGACTTG-GGAGCGATACTTCTTTTCAGTTTCATACTTGGCATACA 6102 Query 23262 ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGA 23321 | | || || || | || |||| || || | ||| || ||| | |||||||| | Sbjct 6101 AAGTTTCGAAGTCCTCTCCCCAACAATCAGCTAAGCCAGGGCATTCATTAGGACACATCA 6042 Query 23322 GACTCCACATTGAGTCATTTTC---AACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | ||||||| ||| ||| | | | |||| ||||||||||| ||||| || Sbjct 6041 AAGACCACATT---TCACCTTCCTTGGCTCTTTTCATGAAAAGATCCGGAATCCACAGCC 5985 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 |||| |||| || || || || | ||| | || || || || | |||| || Sbjct 5984 CGTAAAACAAGTCTCGTGCCCGATTGGCATCTGTCCCATCATTTTTCTTAAGCTCCAGAA 5925 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 | |||| | || |||||||| || || || |||| ||||| || || ||||| || | Sbjct 5924 AATCCATGATATCAGCATGCCATGGTTCTAGATAAATAGCAAAAGCACCAGGTCTTTTGT 5865 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 | || || || ||||| || ||| || | ||| | ||| ||||| || || || | Sbjct 5864 TTCCTCCTTGGTCGACATACTTGGCGGTACTATTGAATACTTGGAGCATTGGAACAAGTC 5805 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 | || || || || | | |||||||| |||| | ||||| |||| Sbjct 5804 CATTCGAGATTCCATTAGTACCATTGATAGCGGAACCTTTGGCTCTGATTTTGTGGACGT 5745 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 || || || ||||| | ||||| || ||| | || ||||| | ||| | ||||| Sbjct 5744 TGAGTCCGATTCCTCCAGCAGATTTAGAGATCTTGGCACATTGAGATAAAGTCTTGTAGA 5685 Query 23679 TGCCCTCGATGCTGTCCT---CTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTT 23735 | || || || || | | ||||| | |||||||| || || | ||| | Sbjct 5684 TTCCATCAATTGAATCATCAGCAATGGTC---AATAAGAAACAGGAGGAAAGTTGAGGAA 5628 Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795 | ||| | || || || || || |||| || || || || | ||||| | Sbjct 5627 TACAAGTACCAGCGTTAAAAAGGGTTGGCGTGGCATGAGTGAACCATTTCTCAGACATCA 5568 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855 ||||| || || || || ||| |||| ||||| ||| || || | || || |||| Sbjct 5567 AGTTGTAAGTCTCAATAGCAGCACCAATATCCTCCTTGTGAATGCCAACAGCAACACGCA 5508 Query 23856 TCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTT 23915 | |||| | ||| || || | || ||||| || | || ||| || | || Sbjct 5507 TTATCAAATGCCCAGGCCTTTCAGCAACTTTTCCATTAATCTTAAGCAAATAAGATCTTT 5448 Query 23916 GCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAAT 23975 || ||||| | |||||||| ||| ||| || | || || || || || | Sbjct 5447 CCAGTGTTTTGTACCCAAAATAAGTATACCCAAAATCTCTGTCCGAAACAATAGCTGAGT 5388 Query 23976 TCAAACGGTACGCATTGGCAGCGATGATGTTGT 24008 | | ||| | ||||| || ||||||||||| Sbjct 5387 TAAGACGATCAGCATTAGCTTGGATGATGTTGT 5355 >seq76 Length=128862 Score = 181 bits (200), Expect = 9e-41 Identities = 947/1508 (63%), Gaps = 42/1508 (3%) Strand=Plus/Plus Query 22454 TTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGT 22513 || || | |||||| ||||| || || || ||| || || || ||||| | || Sbjct 12728 TTGACAATTTGAAAGTCGCCAGAGGTTACACGACGTGAATACATATTAGATGTATATGGC 12787 Query 22514 TCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAAC 22573 || | | |||||||||||| || || |||||||| ||||| || ||||| || || | Sbjct 12788 TCAATACTTTCATTGTTTCCAAGAATTTGAGCGGTTGAAGCTGTTGGCATAGGTGCAAGG 12847 Query 22574 AGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGA--CCAGTCCC 22631 || | || ||||| | || || || |||| | ||| ||| ||| ||| |||| Sbjct 12848 AGCAAAGAATTTCTAACCCCATGTAATGCAATTCTTTCCTTAAGC--CGACCCCAATCCC 12905 Query 22632 ACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCG 22691 | ||||| || || || ||||| |||||| || ||||||| | || | | | Sbjct 12906 AAAGATCTGATGGTGTAACATT---CCACATGTCATATTGCAGAATTCCTTTAGAAACAG 12962 Query 22692 GGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCA 22751 || || |||| ||| ||| || || | | | || | ||| || || |||| Sbjct 12963 GGGAACCAGCGTAGGTTGAGTATGGTCCGTCGCTTTCAGCCAATTCACAAGATGCTTCCA 13022 Query 22752 ACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTC---GGCGGCGG-CGACG 22807 ||| || | ||| || || || || ||||| ||||| || || || ||| || | Sbjct 13023 ACGAACCATGATAGATTGTTTCAAATATTTTTTTGTTTAAATCCTTTGCATCGGAAGAAG 13082 Query 22808 CTTTCGTACGGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACC 22866 | | | ||| ||||| || ||| |||||||| | || || || || | ||| Sbjct 13083 C-----AAATGGATATTTCATCAACATGAAAGCGTCCGCTAATCCTTGGACACCCAAACC 13137 Query 22867 GATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATC 22926 || |||| || ||||| || || | |||| | || | || || | || ||| Sbjct 13138 AATAGGTCTGTGTTTCATGTTTGAATTTCTTGCTTGTGGGACCGGGTAATAGTTGACATC 13197 Query 22927 GATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTC 22986 || | | ||||||||||| || |||| ||| | || |||| || Sbjct 13198 AATAACTTTATTCAAGTTTCTAGTTACAACTTTGGCTACTTCATGAAGTTTTGCAAAATC 13257 Query 22987 GTA---------AACGCCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATT 23037 | | |||| || ||| || ||||| | ||| || || || | ||| Sbjct 13258 AAATTTCCTTGTATCGCCGTCAACTATAACGAATTTGTTTAAGGCAATTGATGCCAAATT 13317 Query 23038 GCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACA 23097 || || || | ||| || || | ||| | |||||||| || || || ||| || Sbjct 13318 ACAAACAGCAATCTCCTCGGGTGATGAGTATTGAACAATTTCAGTGCAGAGGTTGGAGCA 13377 Query 23098 CTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCAT 23157 || || || || | ||| || |||||||||| ||||| | |||||| | | || Sbjct 13378 TTTAATAGTTCCAAGATTTTGTTGATTGCTTTTTCTGTTGCAGGCATCCTTAAACAAAAT 13437 Query 23158 GTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA------TAGTCTG 23211 ||| || | || || || | || || | ||| | | | | | || Sbjct 13438 GTAAGGAGCTCCTGTTTCAATTTGATTTTCAACAATCTTTTTGAAAACTTCTCTTGCCTT 13497 Query 23212 AGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAA 23271 | | ||||| ||| | | ||||| || | || || || || | || || || Sbjct 13498 AACTTGAAC---TCGAA---ATCTGCCCTCATTTTCATATCGTTCATAAAGTGCCTCGAA 13551 Query 23272 TTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACAT 23331 ||| ||| |||| || || | ||| || ||| || ||||| | | |||||| Sbjct 13552 TTCCTGACCCCAACAATCAGCTAAGCCTGGACATTCGTGTGGGCACATCAAAGACCACAT 13611 Query 23332 TGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTC 23391 || ||||| | | | ||||||| | ||| || | ||| | |||| |||| || Sbjct 13612 ACCATCGGTTTCAGCTCTTTTCATAAACAAATCAGGGACCCACAACCCGTAAAACAAGTC 13671 Query 23392 GCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTC 23451 || || || ||| | || ||||| || || |||||||| || || | || Sbjct 13672 ACGCGCACGATTGCTATCTGTTCCATCATTCTTCTTTAATTCCAAAAATTCAAATATATC 13731 Query 23452 CGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATC 23511 |||||||| || || ||||||| |||||| || || ||||| ||||| || || || | Sbjct 13732 AGCATGCCAGGGTTCAAGGTAAATGGCAAAAGCACCTGGTCTTTTATTACCTCCTTGGTT 13791 Query 23512 GACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCC 23571 ||| || | || |||||||| | ||| ||||| || || | ||| || || ||| Sbjct 13792 GACATATCTTGCTGTGTTGTTAAATACTTGGAGCATTGGAACTAAACCATTAGAAACGC- 13850 Query 23572 GCCTACG--CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATG 23629 | | || || | | ||||| ||||||| |||||||| || ||||| Sbjct 13851 -CATTCGTTCCATTTATGGCAGTTCCTTTAGCTCGAATACAGTGAACGTTCAATCCTATT 13909 Query 23630 CCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATG 23689 ||||| |||||||||| || | || ||||| | |||||| | || || | ||| Sbjct 13910 CCTCCTGCCGATTTCGAAATTAAGGCACATTGAGATAAAGTGTCAAAAATTCCTTTGATT 13969 Query 23690 CTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCC 23749 ||||| | | | ||| ||||| ||| | | ||| | | || || | || Sbjct 13970 GAATCCTCAGACATAGTCAACAAAAAACAAGAACATAATTGAGGAGTAGGGGTTCCTGCG 14029 Query 23750 GAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCG 23809 || || || || | || |||||||| || | ||||| |||||| || || Sbjct 14030 TTAAAAAGAGTTGGAGTAGCATGCGTAAACCATTTTTCAGACATGTAATTGTATGTTTCA 14089 Query 23810 ATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGA 23869 || || || |||||||| ||| ||| ||||| | || || ||||| |||| || Sbjct 14090 ATAGCAGCTTCAATGTCTTCTTTGTGAATACCAACTGCAACACGCATTATCAAATAACCT 14149 Query 23870 GGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAAT 23929 ||||| || || ||||| || ||||||| || ||||| || | | ||||| || Sbjct 14150 GGTCTTTCAACAACTACGCCATTGATTTTGAGCAAATATGCGCGCTCTAATGTTTTGTAT 14209 Query 23930 CCAAAATA 23937 |||||||| Sbjct 14210 CCAAAATA 14217 >seq30 Length=447140 Score = 145 bits (160), Expect = 7e-30 Identities = 246/356 (69%), Gaps = 3/356 (1%) Strand=Plus/Plus Query 22433 AAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGG 22492 ||||| || | ||| ||| |||||| | ||| || || || || | || || || | Sbjct 97588 AAATCCTTAAGCAGGTGAGAGTTCACAATTTGGAAATCTCCTGATGATACACGACGAGAG 97647 Query 22493 TAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAA 22552 || || || || ||| | ||||| | ||| |||||||||| || ||||| ||||| Sbjct 97648 TACATATTCGAAGTGTATGGTTCAATGCTTTCGTTGTTTCCCAAAATTTGAGCAGTCGAG 97707 Query 22553 GCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTC 22612 ||||| ||||| || || || |||| || ||||| | || || || | ||| || | Sbjct 97708 GCGGTTGGCATTGGAGCTAAGAGTAATGAATTTCTTACTCCATGTTTAGCAATCTTTTCC 97767 Query 22613 TTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGC 22672 ||||| | |||||||||||| || ||||| || ||||| |||||||||||||||| Sbjct 97768 TTGAGTGCAGCCCAGTCCCACAGTTCAGACGGAGTGACATT---CCACATATCGTATTGC 97824 Query 22673 AACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCA 22732 || | || |||| |||||||| ||| || || |||| | | | || Sbjct 97825 AAAATTCCCTTTGAAACCGGTGATCCTTCGTAAGTTGAATAGGGTCCATCTTTTTCAGCT 97884 Query 22733 AGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTT 22788 ||||| || || ||||| || || | || |||||||| ||||| || ||||| Sbjct 97885 AGTTCACAAGAAGCTTCCAAAGCACCATGGTAAATAGTCTCAAAGATCTTTTTGTT 97940 >seq6 Length=947499 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| |||| || ||||| |||||| | || || ||| | ||| Sbjct 442866 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAAACCATCACCCTGGAAGTCGAAGCTTCC 442807 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || ||||||||||| | || || ||||| Sbjct 442806 GACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCAA 442747 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || || || || || ||||| || | ||| | || || || ||| Sbjct 442746 CAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAAC 442687 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || |||||| |||| || ||||| || || || Sbjct 442686 ATCCAAAAGGAGTCAACCCTTCATTTGGTCCTCAGACTCAGAGGAGG 442640 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || ||||| |||||| | || || ||| | ||| Sbjct 442638 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAAACCATCACCCTGGAAGTCGAAGCTTCC 442579 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || ||||||||||| | || || ||||| Sbjct 442578 GACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCAA 442519 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || || || || || ||||| || | ||| | || || || ||| Sbjct 442518 CAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAAC 442459 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || |||||| |||| || ||||| || || || Sbjct 442458 ATCCAAAAGGAGTCAACCCTTCATTTGGTCCTCAGACTCAGAGGAGG 442412 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || || ||||| || ||| | || ||||| | ||| Sbjct 443094 ATGCAAATTTTCGTTAAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATCC 443035 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | ||| ||||||||||| | || || ||||| Sbjct 443034 GACACCATCGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAA 442975 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || ||||| || || || ||||| || | ||| || || Sbjct 442974 CAAAGACTTATCTTTGCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACAAT 442915 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || |||||||| ||||| || |||| |||||||| || || || Sbjct 442914 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTTAGACTCAGAGGAGG 442868 >seq32 Length=411647 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||| ||||||| ||||| || || | || |||||| | || Sbjct 325834 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 325893 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||| | || || || || Sbjct 325894 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAA 325953 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | |||| || ||||| ||||| |||||||| | || | ||| || ||| Sbjct 325954 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAAC 326013 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||||||||| || ||||| |||| |||||||| || || || Sbjct 326014 ATCCAAAAAGAATCTACCCTTCACTTGGTTCTTAGACTTAGAGGAGG 326060 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || ||||| || || | || || ||| | || Sbjct 326062 ATGCAGATTTTCGTTAAGACTCTTACCGGGAAAACAATTACTCTTGAAGTCGAAGCCTCT 326121 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | || ||||||||||| | || || || || Sbjct 326122 GACACCATTGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAA 326181 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || || || || |||||||| ||| || ||| || ||| Sbjct 326182 CAACGTCTTATCTTTGCCGGAAAGCAATTGGAAGATGGGCGTACTTTGTCCGACTACAAC 326241 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||||||||| || ||||| |||| | ||||| Sbjct 326242 ATCCAAAAAGAATCTACCCTTCACTTGGTTTTGAGACT 326279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763775550320