Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq30 102 2e-16 >seq30 Length=447140 Score = 102 bits (112), Expect = 2e-16 Identities = 286/439 (65%), Gaps = 9/439 (2%) Strand=Plus/Plus Query 93861 TCCCTTTTCTTTGGCAATTTCACATGAAGCTTCCAAGGCACCATAGTATATAGTTTCAAA 93920 ||| | || || || | |||||| ||||||||||| ||||||| ||| ||||| ||||| Sbjct 97869 TCCATCTTTTTCAGCTAGTTCACAAGAAGCTTCCAAAGCACCATGGTAAATAGTCTCAAA 97928 Query 93921 AATCCTCTTGTTAATTAGTGCCGCTTCTTCAGATTCGAAGGGGATTCTGAGTTTGAAGAA 93980 ||| | ||||| | | || | ||||| ||| || | ||| | | ||| Sbjct 97929 GATCTTTTTGTTGACATCTTTAGCAGCATCAGAAGTGAATGGTAGTCTCAACAACATGAA 97988 Query 93981 CAAATCTGCTAGTCCCTGCACACCCAATCCCATTGGCCTAGTTTTCATATTGGAAATGCG 94040 ||| |||| ||| || || ||||| || || |||||| | ||||||| || | | Sbjct 97989 AGCATCAGCTAATCCTTGGACCCCCAAGCCAATAGGCCTATGTCTCATATTTGAGTTTCT 98048 Query 94041 GGTCTTGTCAACTGCATAGAAATTGACATCAATCACCTTGTCGAGATTTCTGGTCATGAT 94100 | | ||| | || ||||||||||||| || |||| | ||| | || || | Sbjct 98049 AGCTTCAGGAACAGGGTAATAATTGACATCAATAACTTTGTTCAAATTCTTCGTAATAAC 98108 Query 94101 TTTTACAACCCTCTTCATCTCCCGGTAATCAACATAGGGCCTTAGGGAAGGGATGGGAGA 94160 || |||| | | || | ||||| ||| | | || | | Sbjct 98109 CTTAGCAACTTGATGAAGCTTGGGATAATC--CATTGTTCTTTTTGCATCTTT------- 98159 Query 94161 ATACTTCACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGA 94220 || || ||||| ||||| | || || ||||| ||||| || ||||| ||| || | Sbjct 98160 ATCATTAACAAATTTGTTCAAGGCAATTGAAGCTAAATTACAAACTGCGACTTCATCAGG 98219 Query 94221 ATCACTGTACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTC 94280 | | |||||| |||||||||||||||||||| || | ||||| | || | ||||| Sbjct 98220 AGAAGAGTACTGAACAATTTCAGTGCACAAATTAGAGCATTTGATAGTTCCAAGATTTTG 98279 Query 94281 TTGGTTAGACTTTCTATTG 94299 ||||||| ||||| ||| Sbjct 98280 TTGGTTACTTTTTCTGTTG 98298 Score = 86.0 bits (94), Expect = 1e-11 Identities = 178/262 (68%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 101806 AAAAGACAAGGCTATCTTGTTTAACGCTGCACAACACTTCCCCGCCATCAAGAAGAAGGA 101865 ||| || |||| || |||||||| ||| | ||| ||| |||||||| |||| Sbjct 100999 AAAGGAAAAGGATAAGTTGTTTAATGCTTTGGAGAACTACCCATGTATCAAGAAAAAGGC 100940 Query 101866 GCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT---TTGGCGGAACTAATTGTTGC 101922 | |||||| | || ||||| | ||| | | | || | ||| | | |||| Sbjct 100939 TGACTGGGCTTTGAAATGGATTAATGACAAGGATGCTCCTTTCGGGGAGCGATGCATTGC 100880 Query 101923 CTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCAA 101982 ||||| || || || || || |||||| || |||| || || || |||||||| || Sbjct 100879 TTTTGCAGCCGTAGAGGGGATTTTCTTTTCCGGATCATTTGCTTCTATCTTCTGGATGAA 100820 Query 101983 GAACAGGGGTATTTTGCCTGGTCTCACCTCC-TCCAATGAGTTCATTTCTAGGGACGAAG 102041 || || || | || | |||| | | || ||||||||||| ||||| || ||||||| Sbjct 100819 GAGCAAAGGCAAATTACATGGTTT-ATGTCAATCCAATGAGTTGATTTCAAGAGACGAAG 100761 Query 102042 GTCTTCATCGCGACTTTGCATG 102063 | || ||||| || ||||| || Sbjct 100760 GCCTCCATCGTGATTTTGCCTG 100739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989578028169805