Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq30 120 3e-22 >seq30 Length=447140 Score = 120 bits (132), Expect = 3e-22 Identities = 475/737 (64%), Gaps = 24/737 (3%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 || |||||||||| | |||||| |||| ||||| |||||||| |||| || || ||||| Sbjct 100447 TTGTTGATATTCAGTTACTCTTCTTTCGAAGAAATTAGTTTTCCCTTGCAAGGAGATATT 100506 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATC-ACAACCTAGTTCTAATA 13698 ||||||||| ||||| |||||| | | | | ||| | || || || | | Sbjct 100507 TTCCATAAACTCAAAAGGATTTTTAGTGTTGTATTTTTTGGGTAGTTCCAAGGTC-ATGA 100565 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||| ||| |||| | || || ||||||||||| | || |||||| || | | Sbjct 100566 GTAGATGATCGGCAACGTATTCGATGTATTGAGACATAAGGTCGTGATTCATTCCGAGAA 100625 Query 13759 GTTTTACAGGAAT-TATA---TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTT 13814 | | || | || | | || |||||||| ||||| || || || || Sbjct 100626 G----AGAGCATGGTAGAGACTCCGTCAAAAATTCCTTTTCGATTTCAACGGCTTCGCCA 100681 Query 13815 ATAATAATTGTAATAATCTCATTAGAAGGAGGATATTT------TAGATGTTTAAAAATT 13868 ||||| ||| ||| || || | |||| ||| |||| | | | || Sbjct 100682 ATAAT--TTGGTATA---TC-TTGGCGGGAGTTGGTTTGTCATCTAGAAGGCGATACATG 100735 Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 | ||| |||||||||| ||| ||||| || ||||| ||| | || || || | Sbjct 100736 AGACAGGCAAAATCACGATGGAGGCCTTCGTCTCTTGAAATCAACTCATTGGATTGACAT 100795 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 || || | | ||| | || | ||| || || | ||||||||| ||||||||| Sbjct 100796 AAACCATGTAATTTGCCTTTGCTCTTCATCCAGAAGATAGAAGCAAATGATCCGGAAAAG 100855 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 || || ||||| || || ||||| || || |||| || || || | || | |||| Sbjct 100856 AAAATCCCCTCTACGGCTGCAAAAGCAATGCATCGCTCCCCGAAAGGAGCATCCTTGTCA 100915 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT-TCAATAGC 14107 |||||||| |||||| |||| ||||| || || | || | ||| || | ||| Sbjct 100916 TTAATCCATTTCAAAGCCCAGTCAGCCTTTTTCTTGAT-ACATGGGTAGTTCTCCAAAGC 100974 Query 14108 ATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 |||||| || | ||||| || || | | | |||||| | ||||| || ||| Sbjct 100975 ATTAAACAACTTATCCTTTTCCTTTGCATCAGTAATGTAAGCCTCAATCAGCTTCGAATA 101034 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGA 14227 ||| ||||| || |||||||| ||| || || || | ||||| | ||| || | Sbjct 101035 CATCTCAGAATGGATGTTTTCAATAAAGATTTGGAACCGGTAAAAATAGAGAGCCTCGGG 101094 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 | || ||||| || | ||| |||||| | || ||||| ||||| || Sbjct 101095 CATTTTAACTTCATCCATGAAGCGTTCTAGCAAATTGGCGTTGACTATGCCATCTGATGC 101154 Query 14288 TGCAAAAAATGCCAATA 14304 |||||||| ||||||| Sbjct 101155 AGCAAAAAAAGCCAATA 101171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479725175601400