Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq30 93.3 4e-14 >seq30 Length=447140 Score = 93.3 bits (102), Expect = 4e-14 Identities = 466/732 (64%), Gaps = 14/732 (2%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 || |||||||||| | |||||| |||| || || |||||||| |||| || || ||||| Sbjct 100447 TTGTTGATATTCAGTTACTCTTCTTTCGAAGAAATTAGTTTTCCCTTGCAAGGAGATATT 100506 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATC-ACAACCTAGTTCTAATA 13486 ||||||||| || || |||||| | | | | ||| | || || || | | Sbjct 100507 TTCCATAAACTCAAAAGGATTTTTAGTGTTGTATTTTTTGGGTAGTTCCAAGGTC-ATGA 100565 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 || ||| |||| | || || ||||||||||| | || |||||| || | | Sbjct 100566 GTAGATGATCGGCAACGTATTCGATGTATTGAGACATAAGGTCGTGATTCATTCCGAGAA 100625 Query 13547 GTTTTACAGGAAT-TATA---TTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTT 13602 | | || | || | | || |||||||| ||||| || || || ||| Sbjct 100626 G----AGAGCATGGTAGAGACTCCGTCAAAAATTCCTTTTCGATTTCAACGGCTTCGCCA 100681 Query 13603 ATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC 13662 ||||| | || || | || || | | |||| | | | || | ||| Sbjct 100682 ATAATTTGGTATATCTTGGCGGGAGTTGGTTTGTCATCTAGAAGGCGATACATGAGACAG 100741 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 |||||||||| ||| ||||| || ||||| ||| | || || || ||| || Sbjct 100742 GCAAAATCACGATGGAGGCCTTCGTCTCTTGAAATCAACTCATTGGATTGACATAAACCA 100801 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782 | | ||| | || | ||| || || | ||| ||||||||||||||||| || Sbjct 100802 TGTAATTTGCCTTTGCTCTTCATCCAGAAGATAGAAGCAAATGATCCGGAAAAGAAAATC 100861 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATC 13842 ||||| || || ||||| || || ||| || || || | || | |||| ||| Sbjct 100862 CCCTCTACGGCTGCAAAAGCAATGCATCGCTCCCCGAAAGGAGCATCCTTGTCATTAATC 100921 Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT-TCGATTGCATTGAA 13901 ||||| |||||| |||| ||||| || || | || | ||| || | ||||| || Sbjct 100922 CATTTCAAAGCCCAGTCAGCCTTTTTCTTGAT-ACATGGGTAGTTCTCCAAAGCATTAAA 100980 Query 13902 TAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 13961 || | ||||| || || | | | |||||| | ||||| || |||||| || Sbjct 100981 CAACTTATCCTTTTCCTTTGCATCAGTAATGTAAGCCTCAATCAGCTTCGAATACATCTC 101040 Query 13962 AGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14021 ||| || |||||||| ||| || || || | |||||| | ||| || | |||| Sbjct 101041 AGAATGGATGTTTTCAATAAAGATTTGGAACCGGTAAAAATAGAGAGCCTC-GGGCATTT 101099 Query 14022 TACCTCCGAGTA-AAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAA 14080 || || | | || | |||| ||| || | || || || ||||| || |||| Sbjct 101100 TAACTTCATCCATGAAGCGTTCTAGCAAATTGGCGTTGACTATGCCATCTGATGCAGCAA 101159 Query 14081 AAAATGCCAATA 14092 |||| ||||||| Sbjct 101160 AAAAAGCCAATA 101171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478585982308440