Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq32 113 5e-20 seq6 84.2 2e-11 >seq32 Length=411647 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | | |||||| || |||| |||||||||||||| |||||||| ||| | Sbjct 326288 CCTCCACGAAGTCTCAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGAC 326229 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||| | ||| || || ||| |||| |||||||| ||||| || || Sbjct 326228 AAAGTACGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGA 326169 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || ||| | | || | ||||| | || ||| ||| Sbjct 326168 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACT 326109 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || || ||||| | || || ||||| || ||||| Sbjct 326108 TCAAGAGTAATTGTTTTCCCGGTAAGAGTCTTAACGAAAATCTGCAT 326062 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || |||| |||||||||||||| |||||||| ||| | || || ||||| Sbjct 326043 AACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGTTCTTCCATCTTC 325984 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | |||||| |||||| |||| | | ||| ||||| || || || ||||| ||||| Sbjct 325983 CAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTG 325924 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | || | ||||| | | ||| ||||||| ||| | || || Sbjct 325923 GATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTT 325864 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| || || || || || ||||| Sbjct 325863 TCCTGTCAAAGTCTTGACAAAAATCTGCAT 325834 >seq6 Length=947499 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || || | ||| || ||||||| || || || ||||| |||||||| || || Sbjct 442184 CCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACTT 442243 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| ||||| | ||| || || ||| |||| || | ||| || || ||||| Sbjct 442244 AAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGG 442303 Query 143078 ATGCCTTCTTTGTC 143091 || ||||||||||| Sbjct 442304 ATTCCTTCTTTGTC 442317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507011414952720