Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq32 104 2e-17 seq6 87.8 2e-12 >seq32 Length=411647 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| | || | ||||| || || |||||||||||||| |||||||| ||| Sbjct 326062 TTCCTCCTCTAAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGG 326003 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | ||||||||||||||| || ||| | || | || |||||||| || Sbjct 326002 ATAAGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGG 325943 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| ||||| || || || || | | ||| | || || ||| Sbjct 325942 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAA 325883 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||||| ||||| || ||||| || ||||||||||| |||||| Sbjct 325882 CTTCAAGAGTAATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCATT 325833 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19981 TCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 |||||| || | ||||| ||||| || || |||||||||||||| |||||||| ||| Sbjct 326289 TCCTCCACGAAGTCTCAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGA 326230 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGG 20100 || ||| |||||||||||| || || ||| | ||||| | |||||||| ||| Sbjct 326229 CAAAGTACGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGG 326170 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGT 20160 | ||||| ||||| || || ||| || | | ||| | || | ||| Sbjct 326169 AATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGAC 326110 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||||| ||||| ||||| | || || || ||||| |||||| Sbjct 326109 TTCAAGAGTAATTGTTTTCCCGGTAAGAGTCTTAACGAAAATCTGCATT 326061 >seq6 Length=947499 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||| || || ||||| |||||||| || || || || ||||| |||||||| || | Sbjct 442182 TTCCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCAC 442241 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||| ||||| || || ||| | ||||| || ||||| || | Sbjct 442242 TTAAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAG 442301 Query 20100 GCACGCCTTCTTTGTC 20115 | | ||||||||||| Sbjct 442302 GGATTCCTTCTTTGTC 442317 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 |||| |||||||| | || ||||| ||||| |||||||| || | ||| Sbjct 441968 CTCAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGAAAGAGTACGTCCG 442027 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTG 20113 || |||||||| || || ||| | ||||| || || || || || | ||||| ||| Sbjct 442028 TCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCCTTCCTTG 442087 Query 20114 TCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGG-TTCCGTTTCCACGGTAAT 20172 || |||||| || || | ||| || || | ||| |||| ||||| ||||| Sbjct 442088 TCTTGAATTTTGGCCTTGACATTATCAATAGTGTC-CGAGGCTTCCACTTCCAAAGTAAT 442146 Query 20173 GGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || ||||| | ||||||||||||||||||||| Sbjct 442147 TGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATT 442183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419584791438351