Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6 168 2e-36 seq32 159 8e-34 seq39 107 4e-18 >seq6 Length=947499 Score = 168 bits (186), Expect = 2e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || ||||| || | || | || ||||||||||| ||||| ||||| Sbjct 442865 ATTCCTCCTCTGAGTCTAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATATTGTAGTCG 442924 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||||| ||| ||||||||||| || || || ||||| || ||| Sbjct 442925 GAGAGGGTACGGCCATCTTCTAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGGTCTGGA 442984 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || ||||| || || || ||||| || | ||| ||| | || Sbjct 442985 GGAATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCGATGGTGTCGGATGCCTCA 443044 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| | |||||||| || |||||||||||||| || || || |||||| Sbjct 443045 ACCTCCAAGGTAATAGTTTTTCCAGTAAGTGTTTTAACGAAAATTTGCATT 443095 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || |||||| || |||||| || ||||||| ||| ||||| Sbjct 442214 GTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCCATCTTCTAATTGCTTTCCG 442273 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || || ||||| || ||||| ||||||||||| || || ||||| || || Sbjct 442274 GCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTG 442333 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || | || ||||| | |||||||| || |||||||| || Sbjct 442334 ACATTATCGATGGTGTCAGATGCCTCAACCTCCAAGGTAATAGTTTTTCCAGTAAGGGTC 442393 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 442394 TTGACGAAGATCTGCATT 442411 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || |||||||| || |||||||| || || || |||||||| || || |||||||| Sbjct 443229 TTACCGGCAAAAATGAGTCTCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGAATCTTC 443288 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| || || || | ||||| || ||| ||||| | || || ||||| || || Sbjct 443289 GCTTTGACGTTGTCGATCGTATCCGAAGCTTCAACCTCCAAGGTGATTGTCTTTCCTGTT 443348 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||||||||| || |||||| || Sbjct 443349 AGCGTTTTTACAAAAATTTGCATTATG 443375 >seq32 Length=411647 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || ||||| || | || | ||||||||||| || || || ||||| Sbjct 326063 ATTCCTCCTCTAAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCG 326004 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || ||||| | ||||||||||||||| |||| || |||||||| || Sbjct 326003 GATAAGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGG 325944 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || || ||||| || || || || || | ||| || || ||| Sbjct 325943 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCA 325884 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || |||||||| || || || | || || ||||| ||||||||| Sbjct 325883 ACTTCAAGAGTAATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCATT 325833 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| || || || ||||| || | ||| | || ||||| | ||| ||||| Sbjct 326258 GTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGCCCATCTTCCAATTGCTTTCCG 326199 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||||| || || |||||||| || || || ||||| ||||| Sbjct 326198 GCAAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTG 326139 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || | ||| || || || ||||| || || || ||||| || Sbjct 326138 ACGTTGTCAATGGTGTCAGAGGCTTCGACTTCAAGAGTAATTGTTTTCCCGGTAAGAGTC 326079 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 326078 TTAACGAAAATCTGCATT 326061 >seq39 Length=348097 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| |||| || |||||||| ||||| |||||||| || || ||||| || Sbjct 169957 TTACCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATTTTA 169898 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || |||||||| || | || || || |||||||| || ||||| ||||||||||| Sbjct 169897 GCCTTTACATTCTCGATAGTGTCTGAAGCCTCTACCTCAAGGGTAATGGTCTTACCAGTC 169838 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 | ||| || || || || |||||| Sbjct 169837 AATGTCTTGACGAAGATTTGCATT 169814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151391451670468