Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6 145 7e-30 seq32 138 1e-27 seq39 100 3e-16 seq2 89.7 5e-13 >seq6 Length=947499 Score = 145 bits (160), Expect = 7e-30 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||| | ||||| ||| ||||| || | ||| || |||||||| | Sbjct 442171 AAAAATTTGCATTCCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGAT 442230 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || || | ||| | ||| || | || |||||| ||||||| | |||||| Sbjct 442231 GTTGTAGTCACTTAAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTG 442290 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || |||||||| || ||||||||||| | || || |||||||| ||| ||||| Sbjct 442291 TTGGTCTGGAGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTC 442350 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || || |||||||||||||| || || || ||||||||||| Sbjct 442351 AGATGCCTCAACCTCCAAGGTAATAGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 442410 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | || | ||||| || | || || |||||||| | ||| || || Sbjct 442408 CATTCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTC 442467 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 || | ||| | |||||||| || |||||| ||||||| | |||||| || ||||| Sbjct 442468 ACTTAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGG 442527 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||| || ||||| ||||| | || || || |||||| | ||| ||||| | || Sbjct 442528 AGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTC 442587 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | |||||||||||||||||||| || || || ||||| ||||| Sbjct 442588 GACTTCCAGGGTGATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 442638 Score = 131 bits (144), Expect = 2e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| | || | ||||| || | || || |||||||| | ||| | Sbjct 442632 TTTGCATTCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGT 442691 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || | ||| | |||||||| || |||||| ||||||| | |||||| || | Sbjct 442692 AGTCACTTAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGT 442751 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 ||||||| || ||||| ||||| | || || || |||||| | ||| ||||| | Sbjct 442752 CTGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAG 442811 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | |||||||||||||| || | ||| || || ||||| ||||| Sbjct 442812 CTTCGACTTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 442866 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGG--AATCCT 94856 ||||| ||||| || ||||||||||| | ||| || | || | || || | |||| Sbjct 441974 ACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGT--CTGAAAGAGTACGTCCGTCCT 442031 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| || |||||| ||||||| | ||||||||| |||||||| || ||||| ||||| | Sbjct 442032 CCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCCTTCCTTGTCTT 442091 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| |||||||| | | |||||| | | || || || | || || || | Sbjct 442092 GAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCACTTCCAAAGTAATTGTCT 442151 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || |||||||| ||||| || ||||| Sbjct 442152 TTCCGGTGAGAGTTTTGACAAAAATTTGCAT 442182 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| | || | |||||||| | ||| ||||| || || | || | Sbjct 442860 TTTGCATTCCTCCTCTGAGTCTAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATATTGT 442919 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| | || | ||| || | || ||||| ||||||| | |||||| || | Sbjct 442920 AGTCGGAGAGGGTACGGCCATCTTCTAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGGT 442979 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||||||||| ||||| ||||| | |||||| |||||||| ||| ||||| | Sbjct 442980 CTGGAGGAATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCGATGGTGTCGGATG 443039 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | || || |||||||||||||| ||||| || || || ||||| Sbjct 443040 CCTCAACCTCCAAGGTAATAGTTTTTCCAGTAAGTGTTTTAACGAAAATTTGCAT 443094 >seq32 Length=411647 Score = 138 bits (152), Expect = 1e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || ||||||||| | || | |||||||| | |||||||| ||||| | | Sbjct 326072 AAAATCTGCATTCCTCCTCTAAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATG 326013 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| | || | ||| |||| |||||||| |||||||||||||||| Sbjct 326012 TTGTAGTCGGATAAGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGT 325953 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| ||||| ||||| ||||| | || || ||||||||| | | | |||||| Sbjct 325952 TGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCA 325893 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| || || |||||||| || | ||| || ||||| |||||||| Sbjct 325892 GAAGCTTCAACTTCAAGAGTAATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 325834 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || |||||||| |||||||||||||| ||||| ||||| | ||||| ||||||| Sbjct 325697 CAAAAATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTGA 325638 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| || |||| || || |||| |||||||| || || || ||||||| Sbjct 325637 CATTATCGATGGTATCAGAAGCTTCAACCTCAAGAGTGATGGTCTTGCCGGTGAGAGTTT 325578 Query 94992 TCACAAAGATCTGCAT 95007 | || || |||||||| Sbjct 325577 TTACGAAAATCTGCAT 325562 >seq39 Length=348097 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| |||||||||||||||| |||||||||||||| ||||| ||||| | |||||| Sbjct 169957 TTACCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATTTTA 169898 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| || ||| |||||| | || || |||| || ||||| || ||||| Sbjct 169897 GCCTTTACATTCTCGATAGTGTCTGAAGCCTCTACCTCAAGGGTAATGGTCTTACCAGTC 169838 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 | || || || ||||| ||||| Sbjct 169837 AATGTCTTGACGAAGATTTGCAT 169815 >seq2 Length=2086053 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| ||||||| |||||||| |||||||||||||| ||||| ||||| | ||| || Sbjct 1233669 TTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATCTTG 1233610 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 || ||||| ||| ||||| | | || || || | || || ||||| || ||| Sbjct 1233609 GCTTTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATTGTTTTACCGGTA 1233550 Query 94985 AGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || |||||| Sbjct 1233549 AGGGTCTTTACGAAAATTTGCATG 1233526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288560685560