Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq16 196 8e-45 >seq16 Length=590713 Score = 196 bits (216), Expect = 8e-45 Identities = 366/530 (69%), Gaps = 6/530 (1%) Strand=Plus/Minus Query 193639 AACCTGCTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGC 193698 |||||||||| || || || | | ||| || |||||| |||||| || ||| ||| Sbjct 481833 AACCTGCTGAAATTTACCATTTAGCTGCCCAGTCTCATGTGAAAGTTAGTTTCGAGTTGC 481774 Query 193699 CAGAGTATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTA 193758 |||||||||| || | ||||||||| | |||||| | | | | || || ||| || Sbjct 481773 CAGAGTATACAGCTGAAGTTGATGCTGTTGGAACTTTGCGTTTGTTGGATGCGGTT-GTT 481715 Query 193759 TGTTG-GGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGT 193817 ||| ||| || | | | ||||| | ||||| || || ||| || ||||||| Sbjct 481714 GCTTGTGGATTGCAAAGTAAAGTTCGTTTTTATCAAGCTTCGACCTCTGAGTTGTATGGA 481655 Query 193818 GGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGT 193877 |||| | | || | ||| || || || |||||| ||||| | |||||||| | Sbjct 481654 AAGGTTCAACAAATCCCTCAATCTGAGACAACTCCATTTTATCCAAGAAGTCCTTATGCT 481595 Query 193878 GTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGG-ATTCCA 193936 || ||||||||||||| ||||||||| ||||||||||| | || | |||| ||| Sbjct 481594 GTTGCAAAGTTGTATGCTTATTGGATTGTCAAGAATTATAGAGAAGCTCATGGTATTTTT 481535 Query 193937 CGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAAC 193996 | | | |||||| ||||| |||||||||||||||||| | ||| | || ||||| Sbjct 481534 GGAT-CTAATGGTATCCTCTTTAATCACGAATCTCCAAGACGTGGTCCTTCTTTCGTAAC 481476 Query 193997 TCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTC-TTTATC 194055 || |||||||| | | | | || || | |||| || ||| | || | | | | Sbjct 481475 CCGAAAGATTACTCGTTCTGTTGCAAAAATTAGTCTTGGGTTCCAGGA-ATGCGTCTCCC 481417 Query 194056 TTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGT 194115 | || || | | ||||||| |||||||| || || ||||| ||||| || || |||| Sbjct 481416 TAGGCAACATCGACTCTAAGAGAGATTGGGGGCATGCTAAGGAATATGTGGAGGCTATGT 481357 Query 194116 GGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGT 194165 || ||| | ||||| |||| | ||||| | ||| ||||| || ||| Sbjct 481356 GGAGAATTCTTCAACACACTGAAGCTGATGACTTTGTCATTGCCACCGGT 481307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807550445518760