Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq30 122 9e-23 >seq30 Length=447140 Score = 122 bits (134), Expect = 9e-23 Identities = 342/516 (66%), Gaps = 12/516 (2%) Strand=Plus/Plus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 || |||||| ||| | |||||| ||||||| ||||| || || |||| ||| || ||| Sbjct 100447 TTGTTGATATTCAGTTACTCTTCTTTCGAAGAAATTAGTTTTCCCTTGCAAGGAGATATT 100506 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTAT-TACAACCCAGTTCTGATA 21302 ||||||||| ||||| ||||||| || || || |||| || || || || || Sbjct 100507 TTCCATAAACTCAAAAGGATTTTTAGTGTTGTATTTTTTGGGTAGTTCCAAGGTC--ATG 100564 Query 21303 ATAATCT-ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 | | | ||| || || |||| || |||||| |||| | || |||||| |||| Sbjct 100565 AGTAGATGATCGGCAACGTATTCGATGTATTGAGACATAAGGTCGTGATTCATTCCGAG- 100623 Query 21362 AATTTTACA-GGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 || || || |||| | |||||||| ||||| || |||||||| |||| Sbjct 100624 AAGAGAGCATGGTAGAGACTCCGTCAAAAATTCCTTTTCGATTTCAACGGCTTCGCCAAT 100683 Query 21421 TATATTTATTATCCTAGATGTACTAGG---GGGATACAATAATTGTTTAAACATCAAACA 21477 || | |||| | | | | | || | || | | || | | |||| | ||| Sbjct 100684 AATTTGGTATATCTTGGCGGGAGTTGGTTTGTCAT-CTAGAA--GGCGATACATGAGACA 100740 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 |||||||||| ||| | ||||| || || || || ||||| || |||||| Sbjct 100741 GGCAAAATCACGATGGAGGCCTTCGTCTCTTGAAATCAACTCATTGGATTGACATAAACC 100800 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597 | | | ||| | | || | ||| || || || ||||||| ||| ||||||||||| Sbjct 100801 ATGTAATTTGCCTTTGCTCTTCATCCAGAAGATAGAAGCAAATGATCCGGAAAAGAAAAT 100860 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657 ||||| ||||| ||||| |||| |||| || ||| | | || || || || || Sbjct 100861 CCCCTCTACGGCTGCAAAAGCAATGCATCGCTCCCCGAAAGGAGCATCCTTGTCATTAAT 100920 Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACA 21693 |||||| ||||| | ||||||| || ||||| Sbjct 100921 CCATTTCAAAGCCCAGTCAGCCTTTTTCTTGATACA 100956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531897668434040