Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq6 140 3e-28 seq32 127 2e-24 seq76 111 2e-19 seq13 111 2e-19 >seq6 Length=947499 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || || | ||||||||| | |||||| | ||| | ||| | Sbjct 442639 AATGCAAATCTTCGTCAAGACCCTTACTGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 442580 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | |||||| ||||| ||||| ||||| || ||||| || || Sbjct 442579 CGACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCA 442520 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||| || | | ||| || ||| | || |||| |||| | || ||||| || Sbjct 442519 ACAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAA 442460 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| ||||| || || || | ||| ||||||| ||||| |||||||||| Sbjct 442459 CATCCAAAAGGAGTCAACCCTTCATTTGGTCCTCAGACTCAGAGGAGGAA 442410 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || || || || || |||||| | |||||| | ||| | ||| | Sbjct 442867 AATGCAAATCTTCGTCAAGACTTTGACCGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 442808 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | |||||| ||||| ||||| ||||| || ||||| || || Sbjct 442807 CGACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCA 442748 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||| || | | ||| || ||| | || |||| |||| | || ||||| || Sbjct 442747 ACAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAA 442688 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| ||||| || || || | ||| ||||||| ||||| |||||||||| Sbjct 442687 CATCCAAAAGGAGTCAACCCTTCATTTGGTCCTCAGACTCAGAGGAGGAA 442638 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || || |||||| | ||||||||| | || ||| | || | || || Sbjct 443095 AATGCAAATTTTCGTTAAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 443036 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| || ||| ||||| ||||| || ||||| || || Sbjct 443035 CGACACCATCGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCA 442976 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||| || | | || || ||| | ||||||| | | | || |||||| || Sbjct 442975 ACAAAGACTTATCTTTGCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACAA 442916 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || |||||||| ||| |||| |||| || ||||| |||||||||| Sbjct 442915 TATCCAGAAAGAATCAACTCTCCACTTGGTTCTTAGACTCAGAGGAGGAA 442866 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | ||||||||| | || ||| | || | || || Sbjct 442411 AATGCAGATCTTCGTCAAGACCCTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 442352 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | ||||| ||||| ||||||||||| || ||||| || || Sbjct 442351 TGACACCATCGATAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCA 442292 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||| || | | ||| || ||| | ||||||| |||| | || ||||| || Sbjct 442291 ACAAAGACTTATCTTTGCCGGAAAGCAATTAGAAGATGGGAGAACTTTAAGTGACTACAA 442232 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| ||||| || || ||| | ||| ||||| ||||| | | ||||||| Sbjct 442231 CATCCAAAAGGAGTCAACTCTTCATTTGGTCTTGAGATTGCGTGGAGGAA 442182 >seq32 Length=411647 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || || || |||||| | || || | ||| | ||| | Sbjct 325833 AATGCAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTC 325892 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 325893 TGACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 325952 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||| | || | | || |||||| | ||||||| |||| | | |||||| || Sbjct 325953 ACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAA 326012 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||| |||||||||||||| | || |||| || |||||||||||||||| Sbjct 326013 CATCCAAAAAGAATCTACCCTTCACTTGGTTCTTAGACTTAGAGGAGGAA 326062 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | || || ||| | || || | ||| | ||| | Sbjct 326061 AATGCAGATTTTCGTTAAGACTCTTACCGGGAAAACAATTACTCTTGAAGTCGAAGCCTC 326120 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || | |||||| ||||| ||||| ||||| || || || ||||| Sbjct 326121 TGACACCATTGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 326180 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||| | || || | | ||| || ||| | ||||||| | | | |||||| || Sbjct 326181 ACAACGTCTTATCTTTGCCGGAAAGCAATTGGAAGATGGGCGTACTTTGTCCGACTACAA 326240 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 ||| |||||||||||||| | || |||| |||||||| | |||||| Sbjct 326241 CATCCAAAAAGAATCTACCCTTCACTTGGTTTTGAGACTTCGTGGAGGA 326289 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 26907 GGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACT 26966 || ||||||||||| |||| |||| | |||||| ||||| |||||||||||||| Sbjct 325744 GGAAAACAACTCGAGGATGGAAGAACTTTATCCGACTACAACATCCAAAAAGAATCTACC 325803 Query 26967 ATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 | ||| ||||||| |||||||||||||||| Sbjct 325804 CTTCATTTGGTCCTTAGACTTAGAGGAGGAA 325834 >seq76 Length=128862 Score = 111 bits (122), Expect = 2e-19 Identities = 247/368 (67%), Gaps = 2/368 (1%) Strand=Plus/Plus Query 148014 AAATTATTTACGGCAATCGAGGCCAAGTTACACACGGCCGTTTC-TCGATTGTCGCTATA 148072 || || |||| |||||| || ||||| ||||| || || | || ||| || | || Sbjct 13289 AATTTGTTTAAGGCAATTGATGCCAAATTACAAACAGCAATCTCCTCGGGTGATGAG-TA 13347 Query 148073 TTGAACGATTTCGGCACACAGATTGCTGTTTCGAATCACTCCCTCGtttttttGATTATT 148132 |||||| ||||| | || || ||| | | ||| ||| |||| |||||| | Sbjct 13348 TTGAACAATTTCAGTGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCT 13407 Query 148133 TTTATTGTTAACGTGATCTTTAAACATCATGTATGGAGCTCCGGTCTCGACTTGAGTCTC 148192 ||| |||| | ||| ||||||| ||||| |||||||| || || | |||| | || Sbjct 13408 TTTTCTGTTGCAGGCATCCTTAAACAAAATGTAAGGAGCTCCTGTTTCAATTTGATTTTC 13467 Query 148193 AATAATTTTTCTATGAAGATCTAAAGCCGAAATTTGTTTTTTAAACTTGCCTTCGGCCTC 148252 || ||| ||| | || ||| ||| || ||| | ||| |||| || || Sbjct 13468 AACAATCTTTTTGAAAACTTCTCTTGCCTTAACTTGAACTCGAAATCTGCCCTCATTTTC 13527 Query 148253 GTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACCGGGACACTC 148312 || ||| ||||| |||||||||| || || | ||||| ||| || ||||| || Sbjct 13528 ATATCGTTCATAAAGTGCCTCGAATTCCTGACCCCAACAATCAGCTAAGCCTGGACATTC 13587 Query 148313 GTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTTACCCTCTTCATAAACAGATCAGG 148372 || ||||||||||| ||||| | || | || | | || |||||||||| |||||| Sbjct 13588 GTGTGGGCACATCAAAGACCACATACCATCGGTTTCAGCTCTTTTCATAAACAAATCAGG 13647 Query 148373 TGTCCACA 148380 ||||| Sbjct 13648 GACCCACA 13655 >seq13 Length=696343 Score = 111 bits (122), Expect = 2e-19 Identities = 247/368 (67%), Gaps = 2/368 (1%) Strand=Plus/Plus Query 148014 AAATTATTTACGGCAATCGAGGCCAAGTTACACACGGCCGTTTC-TCGATTGTCGCTATA 148072 || || |||| |||||| || ||||| ||||| || || | || ||| || | || Sbjct 650268 AATTTGTTTAAGGCAATTGATGCCAAATTACAAACAGCAATCTCCTCGGGTGATGAG-TA 650326 Query 148073 TTGAACGATTTCGGCACACAGATTGCTGTTTCGAATCACTCCCTCGtttttttGATTATT 148132 |||||| ||||| | || || ||| | | ||| ||| |||| |||||| | Sbjct 650327 TTGAACAATTTCAGTGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCT 650386 Query 148133 TTTATTGTTAACGTGATCTTTAAACATCATGTATGGAGCTCCGGTCTCGACTTGAGTCTC 148192 ||| |||| | ||| ||||||| ||||| |||||||| || || | |||| | || Sbjct 650387 TTTTCTGTTGCAGGCATCCTTAAACAAAATGTAAGGAGCTCCTGTTTCAATTTGATTTTC 650446 Query 148193 AATAATTTTTCTATGAAGATCTAAAGCCGAAATTTGTTTTTTAAACTTGCCTTCGGCCTC 148252 || ||| ||| | || ||| ||| || ||| | ||| |||| || || Sbjct 650447 AACAATCTTTTTGAAAACTTCTCTTGCCTTAACTTGAACTCGAAATCTGCCCTCATTTTC 650506 Query 148253 GTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACCGGGACACTC 148312 || ||| ||||| ||||||||||||| || | ||||| ||| || ||||| || Sbjct 650507 ATATCGTTCATAAAGTGCCTCGAATTCTTGACCCCAACAATCAGCTAAGCCTGGACATTC 650566 Query 148313 GTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTTACCCTCTTCATAAACAGATCAGG 148372 || ||||||||||| ||||| | || | || | || |||||||||| |||||| Sbjct 650567 GTGTGGGCACATCAAAGACCACATACCATCGGTTTCAGTTCTTTTCATAAACAAATCAGG 650626 Query 148373 TGTCCACA 148380 ||||| Sbjct 650627 GACCCACA 650634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478659581875120