Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 105 2e-17 seq41 84.2 6e-11 >seq2 Length=2086053 Score = 105 bits (116), Expect = 2e-17 Identities = 175/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 145536 TCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGTCTGGA 145595 || |||||| ||||||||| ||||| ||||| | |||| | ||| || | Sbjct 479238 TCGTCATCTTTAAATCCAGTACCGATTTTGCAGATCGTTTGATATCTTTCACTTTCGGCG 479297 Query 145596 TCATA-CACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCGGTATA 145654 ||||| || ||| || ||| | ||||| ||||||||||| || || | ||| || Sbjct 479298 TCATAACAAGCCAACAAA-TATCCTCCATAAACACCAGTACGCTTCCCCCCTCCGTGGTA 479356 Query 145655 CCCCGCAATTGGTACAAGATCACAACTATCACCCATTCCGGCAAGATAATCCTTTTTAAG 145714 ||| ||| | ||| | ||| || |||| || | ||| ||||||||||||| || | Sbjct 479357 CCCGCCAACTACTACTAAATCCAAAGTATCCCCGACTCCATCAAGATAATCCTTCTTCAA 479416 Query 145715 TTTTAGCCAATTGAGAGAACGTTT--CGATGGTTCATAGCTAGAGTTATCGTCCAATGAT 145772 ||| ||||||||| | |||||||| |||| ||||||| | | ||||| ||||| | Sbjct 479417 TTTGAGCCAATTGTGGGAACGTTTAGCGAT--TTCATAGGTCGCCTTATCATCCAACGTC 479474 Query 145773 TTTACCAT 145780 || ||||| Sbjct 479475 TTAACCAT 479482 >seq41 Length=345181 Score = 84.2 bits (92), Expect = 6e-11 Identities = 261/391 (67%), Gaps = 10/391 (3%) Strand=Plus/Plus Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGAC 111479 || ||||||||||||| |||||| || | | | |||| | | | | | || || Sbjct 113708 GTCAAAATTTGGGATGCAAATGGTTCTAGAG-CGTTCTTGGATAATCTAGGATTCACGGA 113766 Query 111480 AACG-AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGA 111538 || | ||||||| || || || || || ||||| |||||||||||||| ||||| || | Sbjct 113767 AAGGGAAGAAGGAGACCTTGGGCCTGTATACGGCTTTCAATGGCGCCATTTTGGAGCTGT 113826 Query 111539 CTACAAAACCATGCACGACTCA-TATGATTCACAGGGAACTGATCAATTA-CAGAATGTC 111596 ||| ||| |||| ||| | || | ||||| ||| || ||| || || || Sbjct 113827 ATAC-AAAGATTGCAAAACTGACTACACTGGGCAGGGTGTTGACCAGTTAGCACAA-GTT 113884 Query 111597 ATTGATCAAATTAAGAA-CAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCC 111655 ||||||||||| || || | |||||| | || | ||| | | |||||||| | Sbjct 113885 ATTGATCAAATCAAAAATGATCCCAACAAC-CGCAGAATTGTCCTCTCCGCATGGAATGC 113943 Query 111656 AAATGCATTGGAAAAAATGGCACTTCCACCATGTCA-TCTTATGTGCCAGTTTTATGTAC 111714 || | || |||||||| |||||||| ||||| | | |||| | || |||| Sbjct 113944 TGCTGACATCGATAAAATGGCCCTTCCACCGTGTCACGCCTTTGTGGTA-TTCGATGTTT 114002 Query 111715 ACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTC 111774 || ||| | | ||||| || ||| || || |||||| ||||| || |||| Sbjct 114003 TGGATGGGGAGTTAAACTGCCATTTGACTCAACGTAGTGGTGATATAGGTCTAGGGGTTC 114062 Query 111775 CGTTTAATATTGCAAGTTACGCACTACTTAC 111805 | || || ||||| ||| ||||| || || Sbjct 114063 CTTTCAACATTGCTTCTTATGCACTCCTAAC 114093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303345734668322