Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6 129 5e-25 seq32 111 1e-19 seq2 98.7 9e-16 seq108 95.1 1e-14 >seq6 Length=947499 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | ||||||||| | |||||| | || || ||||| Sbjct 442411 AATGCAGATCTTCGTCAAGACCCTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 442352 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | ||||| ||||| ||||||||||| || ||||| || || Sbjct 442351 TGACACCATCGATAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCA 442292 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| || | | ||| |||||| | ||||||| |||| | || || || || Sbjct 442291 ACAAAGACTTATCTTTGCCGGAAAGCAATTAGAAGATGGGAGAACTTTAAGTGACTACAA 442232 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||| || || || ||||||| || || |||||| | |||||| Sbjct 442231 CATCCAAAAGGAGTCAACTCTTCATTTGGTCTTGAGATTGCGTGGAGGA 442183 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | ||||||||| | || ||| | |||||||| || Sbjct 442639 AATGCAAATCTTCGTCAAGACCCTTACTGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 442580 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | |||||| ||||| ||||| ||||| || ||||| || || Sbjct 442579 CGACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCA 442520 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| || | | ||| |||||| | || |||| |||| | || || || || Sbjct 442519 ACAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAA 442460 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||| || || || ||||||| || | ||| | ||||||||| Sbjct 442459 CATCCAAAAGGAGTCAACCCTTCATTTGGTCCTCAGACTCAGAGGAGGA 442411 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || || || |||||| | || ||| | |||||||| || Sbjct 442867 AATGCAAATCTTCGTCAAGACTTTGACCGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 442808 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | |||||| ||||| ||||| ||||| || ||||| || || Sbjct 442807 CGACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCA 442748 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| || | | ||| |||||| | || |||| |||| | || || || || Sbjct 442747 ACAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAA 442688 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||| || || || ||||||| || | ||| | ||||||||| Sbjct 442687 CATCCAAAAGGAGTCAACCCTTCATTTGGTCCTCAGACTCAGAGGAGGA 442639 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || |||||| | ||||||||| | |||||| | || || ||||| Sbjct 443095 AATGCAAATTTTCGTTAAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 443036 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| || ||| ||||| ||||| || ||||| || || Sbjct 443035 CGACACCATCGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCA 442976 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| || | | || |||||| | ||||||| | | | | || ||| || || Sbjct 442975 ACAAAGACTTATCTTTGCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACAA 442916 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || |||||||| || | || || || | ||| | ||||||||| Sbjct 442915 TATCCAGAAAGAATCAACTCTCCACTTGGTTCTTAGACTCAGAGGAGGA 442867 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || ||||||| | ||||||||||| |||| ||||| | || ||| | || || || || Sbjct 443375 CATAATGCAAATTTTTGTAAAAACGCTAACAGGAAAGACAATCACCTTGGAGGTTGAAGC 443316 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || || ||||| | |||||| |||||| ||||| ||||| || || || || Sbjct 443315 TTCGGATACGATCGACAACGTCAAAGCGAAGATTCAAGACAAGGAAGGAATTCCACCAGA 443256 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAG 24134 ||||||||||| |||| | ||| ||| Sbjct 443255 CCAACAGAGACTCATTTTTGCCGGTAAG 443228 >seq32 Length=411647 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || || || |||||| | ||||| | ||||| || || Sbjct 325833 AATGCAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTC 325892 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 325893 TGACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 325952 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| | || | | || || ||| | ||||||| |||| | | ||| || || Sbjct 325953 ACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAA 326012 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| |||||||||||||| |||| || || | ||| | ||||||||| Sbjct 326013 CATCCAAAAAGAATCTACCCTTCACTTGGTTCTTAGACTTAGAGGAGGA 326061 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || || ||| | ||||| | |||||||| ||| Sbjct 326061 AATGCAGATTTTCGTTAAGACTCTTACCGGGAAAACAATTACTCTTGAAGTCGAAGCCTC 326120 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | |||||| ||||| ||||| ||||| || || || ||||| Sbjct 326121 TGACACCATTGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 326180 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | | ||| |||||| | ||||||| | | | ||| || || Sbjct 326181 ACAACGTCTTATCTTTGCCGGAAAGCAATTGGAAGATGGGCGTACTTTGTCCGACTACAA 326240 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| |||||||||||||| |||| || || || ||| | | |||||| Sbjct 326241 CATCCAAAAAGAATCTACCCTTCACTTGGTTTTGAGACTTCGTGGAGGA 326289 >seq2 Length=2086053 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || ||||| || | || || ||| | |||||| |||| || |||||| | Sbjct 1233527 ATGCAAATTTTCGTAAAGACCCTTACCGGTAAAACAATTACCCTCGAGGTTGAGGCCTCC 1233586 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| |||||| ||||| ||||| || ||||| |||||| Sbjct 1233587 GACACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 1233646 Query 24111 CAGAGACTGATTTACGGCGGCAAG 24134 || ||| |||| | | ||| ||| Sbjct 1233647 CAAAGATTGATCTTTGCCGGTAAG 1233670 >seq108 Length=67188 Score = 95.1 bits (104), Expect = 1e-14 Identities = 276/420 (66%), Gaps = 9/420 (2%) Strand=Plus/Minus Query 132001 TTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATTCAACAATACTTTCTGCTT 132060 |||| ||| |||||||| | ||| | || || |||||| || ||| || | || | Sbjct 7120 TTGAGACTGGTCGATGTAGGCTCCACGATCCGCTGCCATACCCATTAATTCTCTTTGACT 7061 Query 132061 AATTTCCCAAGCGGTCTTGAAGAGCGCCTTGACGTCGTGTGGAATGTCATCGATATTCTG 132120 | ||| | | |||||| | || |||| | || ||||| || |||||||| || Sbjct 7060 CAGTTCATACACAGTCTTGTAAAGTTCCTTAATATCCGAGGGAATTTCTTCGATATTTTG 7001 Query 132121 TACAGATCCGTTGTTTTTGATAATTTTCATCATCAGTTCTGTCGAGTACACGTTGCAGT- 132179 | ||||| ||||| ||| || || | ||| || || ||| || |||| Sbjct 7000 AATGGATCCATTGTTGGAGATGATCTTAGTTTTCATCTCATCCGTCCACAAGTC-CAGTT 6942 Query 132180 CTACGAGTTTATCGACGAGATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTC 132239 |||| || | | | ||||| |||||| |||||||| || || ||| | || | | Sbjct 6941 CTACAAGATCCTTCAGAAGATGGCAATTTACGATTTGATAATCTCCTGATGATACACGGC 6882 Query 132240 GTACGTACAAATTACTAGTAAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTG 132299 | ||||| ||| ||| | || || | ||||||||||||||| |||||||| | Sbjct 6881 GAGAGTACATATTCGAAGTGTATGGTTCAATGCTTTCGTTGTTTCCCAAAATTTGAGCAG 6822 Query 132300 TCGTTGCCGTCGGCATGTAGGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCA--T 132357 ||| || |||||||| || | | || |||||| | | || ||| | || | | Sbjct 6821 TCGAGGCGGTCGGCATTGGAGCTAAGAGTAGTGAATTTCTTACTCCATGTTTAGCAATCT 6762 Query 132358 TTGCCGTTTAAGCTCGTCCCAGTTCCACAGATCATTCGATTGAGAGATATTCCACAAATC 132417 || || || || | |||||| |||||| ||| || ||| || |||||||| ||| Sbjct 6761 TTTCC--TTGAGTGCAGCCCAGTCCCACAGTTCA---GACGGAGTGACATTCCACATATC 6707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429933532033005