Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq32 95.1 1e-14 >seq6 Length=947499 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || || ||||| || || || |||||||| |||||| | || ||| | Sbjct 442411 AATGCAGATCTTCGTCAAGACCCTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 442352 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | | || || || || || |||||||| |||| || || Sbjct 442351 TGACACCATCGATAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCA 442292 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||||| | ||| || || ||||||||||||| | ||| | || || || Sbjct 442291 ACAAAGACTTATCTTTGCCGGAAAGCAATTAGAAGATGGGAGAACTTTAAGTGACTACAA 442232 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| ||||| ||||| ||| | ||| |||| ||||||||||| ||||||| Sbjct 442231 CATCCAAAAGGAGTCAACTCTTCATTTGGTCTTGAGATTGCGTGGAGGAA 442182 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||||||||| ||||| ||||| || ||||| | ||| ||| || Sbjct 442183 AATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACAATTACTTTGGAAGTGGAAGCCTC 442124 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| | || || |||||| || || ||||| |||| || || Sbjct 442123 GGACACTATTGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCA 442064 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||||||||| | ||| || || ||||| || || | || | | || || || Sbjct 442063 GCAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGACGGACGTACTCTTTCAGACTACAA 442004 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| ||||| || || || | ||| |||| ||||| | || || || Sbjct 442003 CATCCAAAAGGAATCAACCTTGCATTTGGTTCTGAGACTTCGTGGTGG 441956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||| || ||||| || || |||||||| |||||| | || ||| | Sbjct 443095 AATGCAAATTTTCGTTAAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 443036 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| | | | || || |||||| || || ||||| | || || || Sbjct 443035 CGACACCATCGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCA 442976 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||||| | ||| || || ||||||||||||| | ||| | |||| || || Sbjct 442975 ACAAAGACTTATCTTTGCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACAA 442916 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || ||||| || ||| | || |||| | ||| | ||||||||| Sbjct 442915 TATCCAGAAAGAATCAACTCTCCACTTGGTTCTTAGACTCAGAGGAGGAA 442866 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| || ||||| || || || ||||||||||| ||| | ||| || | Sbjct 442639 AATGCAAATCTTCGTCAAGACCCTTACTGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 442580 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 |||||| | | |||| || ||| || || || || ||||| |||| || | Sbjct 442579 CGACACCATCG-ACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACC 442521 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||||||||||| | ||| || || ||||| || |||| | ||| | || || | Sbjct 442520 AACAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACA 442461 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||| ||||| ||||| || | ||| |||| | ||| | ||||||||| Sbjct 442460 ACATCCAAAAGGAGTCAACCCTTCATTTGGTCCTCAGACTCAGAGGAGGAA 442410 >seq32 Length=411647 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| ||||||||||| || | || |||||||| ||||| | ||| || | Sbjct 325833 AATGCAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTC 325892 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| || ||||| || || || || || || ||||| | ||| |||| Sbjct 325893 TGACACCATT-GACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATC 325951 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | |||||| | || | ||| || |||||||| ||||||| | |||| | |||| || | Sbjct 325952 AACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACA 326011 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||| |||||||| ||||| | || |||| | ||| | ||||||||| Sbjct 326012 ACATCCAAAAAGAATCTACCCTTCACTTGGTTCTTAGACTTAGAGGAGGAA 326062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425341558392520