Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 9e-16 seq108 96.9 3e-15 seq30 93.3 4e-14 seq76 91.5 1e-13 seq13 91.5 1e-13 seq32 84.2 2e-11 >seq6 Length=947499 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | ||| || ||||| | ||| || |||||||| |||||||| || Sbjct 441956 CCACCACGAAGTCTCAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGAA 442015 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| | ||||| || || |||| | | |||||||| |||||| Sbjct 442016 AGAGTACGTCCGTCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGG 442075 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||||| ||||| | || | ||| || | || || | Sbjct 442076 ATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCACT 442135 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || ||||| |||||||| || ||||| ||||| Sbjct 442136 TCCAAAGTAATTGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 442182 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || ||||| | || || ||||| | || ||||||||||| |||||||| || || Sbjct 442184 CCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACTT 442243 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | | || |||| ||||| || || |||| | | || ||||| |||||| Sbjct 442244 AAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGG 442303 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||| || ||||| | || | || || | | ||| | Sbjct 442304 ATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGATGCCTCAACC 442363 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||| || || || || || ||||| |||||||| Sbjct 442364 TCCAAGGTAATAGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 442410 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || ||||| | ||| ||||||||||| |||||||| || || | || | | ||| Sbjct 442655 AGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCCATCC 442714 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || | ||||| || || |||| | | || ||||| |||||||||||||| ||||| Sbjct 442715 TCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCT 442774 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || |||| | || | || |||| | |||| || | ||| | |||| Sbjct 442775 TGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTGATGGTT 442834 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| | ||| || ||||| || ||||| Sbjct 442835 TTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 442866 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || ||||| | ||| ||||||||||| |||||||| || || | || | | ||| Sbjct 442427 AGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCCATCC 442486 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || | ||||| || || |||| | | || ||||| |||||||||||||| ||||| Sbjct 442487 TCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCT 442546 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || |||| | || | || |||| | |||| || | ||| | |||| Sbjct 442547 TGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTGATGGTT 442606 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || ||||| || ||||| Sbjct 442607 TTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 442638 >seq108 Length=67188 Score = 96.9 bits (106), Expect = 3e-15 Identities = 120/162 (74%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 145607 ACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGG-CGTC 145665 |||||| | | || | || || || ||||| |||||||| || | || |||| || Sbjct 6360 ACCACAAATTTGTTTAATGCAATAGAAGCCAAGTTACAAACGGCAATTTCATCGGGCGAA 6301 Query 145666 GCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTG 145725 | |||||||||||| || | |||||||||| || || |||||||| ||||| || || Sbjct 6300 GA-GTATTGTACGATTTCTGTGCACAAATTGGAGCACTTTATGGTTCCAAGATTCTGTTG 6242 Query 145726 ATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 || ||||| |||||||| || || ||| | || ||||| || Sbjct 6241 GTTGCTTTTTCTGTTGCAAGCATCTTTGAATAGGATGTAAGG 6200 >seq30 Length=447140 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 145624 GGCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCT 145682 ||| || || || |||||||||||||| || || || | | ||| || || || | Sbjct 98181 GGCAATTGAAGCTAAATTACAAACTGCGACTTCATCAGGAGAAG-AGTACTGAACAATTT 98239 Query 145683 CGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGC 145742 | | ||||||||| |||||||| ||||| |||||||| || |||||||| ||||||| Sbjct 98240 CAGTGCACAAATTAGAGCATTTGATAGTTCCAAGATTTTGTTGGTTACTTTTTCTGTTGC 98299 Query 145743 ACGCGTCCTTGTAGAGCATGTACGG 145767 | || || ||||| || ||||| || Sbjct 98300 AAGCATCTTTGTAAAGAATGTAGGG 98324 >seq76 Length=128862 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/131 (77%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 145624 GGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCT--GTATTGTACGATC 145681 ||| || || |||||||||||||| || ||||||||| || | | |||||| || || Sbjct 13300 GGCAATTGATGCCAAATTACAAACAGCAATCTCCTCGG-GT-GATGAGTATTGAACAATT 13357 Query 145682 TCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTG 145741 || | ||| | ||| ||||| || ||||| |||||||| ||||| ||||| |||||| Sbjct 13358 TCAGTGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCTTTTTCTGTTG 13417 Query 145742 CACGCGTCCTT 145752 || || ||||| Sbjct 13418 CAGGCATCCTT 13428 >seq13 Length=696343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/131 (77%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 145624 GGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCT--GTATTGTACGATC 145681 ||| || || |||||||||||||| || ||||||||| || | | |||||| || || Sbjct 650279 GGCAATTGATGCCAAATTACAAACAGCAATCTCCTCGG-GT-GATGAGTATTGAACAATT 650336 Query 145682 TCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTG 145741 || | ||| | ||| ||||| || ||||| |||||||| ||||| ||||| |||||| Sbjct 650337 TCAGTGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCTTTTTCTGTTG 650396 Query 145742 CACGCGTCCTT 145752 || || ||||| Sbjct 650397 CAGGCATCCTT 650407 >seq32 Length=411647 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCT 131085 || || || | ||| || || ||||| |||||||| ||| || || ||| || || Sbjct 326270 ACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGCCCATCTTCC 326211 Query 131086 AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTG 131145 | ||||| || || |||| | ||| || || || || || |||||||| ||||| | Sbjct 326210 AATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGG 326151 Query 131146 ATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTA 131205 || || |||| | || | || || | || |||| || | |||| ||||| Sbjct 326150 ATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACTTCAAGAGTAATTGTTTTC 326091 Query 131206 CCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||||| ||||| || |||||||||||||| Sbjct 326090 CCGGTAAGAGTCTTAACGAAAATCTGCAT 326062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010021024640