Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq31 132 3e-26 seq6 118 7e-22 seq32 93.3 3e-14 seq183 86.0 4e-12 >seq31 Length=423495 Score = 132 bits (146), Expect = 3e-26 Identities = 198/281 (70%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 6204 TACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAA 6263 ||||| |||||||||||| || || || || || || || ||||| || || || Sbjct 112769 TACCGTTACAAAATGCCGAAACTCCAAGCAAAAGTTGAAGGCAAAGGAAATGGAATCAAG 112828 Query 6264 ACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCG 6323 || || || |||||| ||||| | || || | || | | | ||| | | || ||| Sbjct 112829 ACAGTTATCTCAAACATGACTGAAATAGCCAAATCTCTAGAAAGACCTCCAATGTATCCG 112888 Query 6324 ACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGC 6383 || || |||||||| |||||| | || ||||| || | || ||| |||||||||| || Sbjct 112889 ACCAAGTATTTCGGCTGCGAATTGGGAGCTCAAACCAACTTCGATAACAAAAACGAACGT 112948 Query 6384 TTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATT 6443 | || || |||||| || || || ||||| |||||||| | |||||||| |||||| Sbjct 112949 TATATTGTCAACGGAGACCACGACGCTACCAAGTTGCAGGACCTTCTTGACGGATTTATT 113008 Query 6444 CGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 |||||||| || ||| | || || || || ||||| Sbjct 113009 AAGAAGTTTGTTCTTTGTGCTAATTGTGAAAATCCAGAGAC 113049 >seq6 Length=947499 Score = 118 bits (130), Expect = 7e-22 Identities = 166/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || || | ||| | ||| |||||||||||||| ||||||||| || ||||| | Sbjct 442180 CATT-CCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGT 442238 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 || ||| | | || |||||||| ||||||||||| || || | |||||| || | Sbjct 442239 CACTTAAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTG 442298 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||||||||| || || ||| ||||| | || || || | Sbjct 442299 GAGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGATGCCT 442358 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || ||||||||||| || || | ||| || ||||| |||||||| Sbjct 442359 CAACCTCCAAGGTAATAGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 442410 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38109 ACCAAATG-AAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||||| ||| || | |||||||| || ||||| || || | | |||| |||| || Sbjct 441974 ACCAAATGCAAGGTTGAT-TCCTTTTGGATGTTGTAGTCTGAAAGAGTACGTCCGTCCTC 442032 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 ||||| ||||||||||| || || | ||| || || | |||| ||||| ||||| Sbjct 442033 CAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTG 442092 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 |||||| ||| ||||| | | ||| || ||| ||||| || ||||| || || Sbjct 442093 AATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCACTTCCAAAGTAATTGTCTT 442152 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||||| || || || ||||| Sbjct 442153 TCCGGTGAGAGTTTTGACAAAAATTTGCAT 442182 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| || ||||| || || || |||||||| || || | ||| | || ||| Sbjct 442886 ACCAAGTGGAGAGTTGATTCTTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCT 442945 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||| ||||| ||||| || || | |||||| || | || | ||||| ||||| | Sbjct 442946 AATTGCTTTCCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGA 443005 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| ||||| | || || || ||||| || || ||||||||||| Sbjct 443006 ATTTTGGCCTTGACATTATCGATGGTGTCGGATGCCTCAACCTCCAAGGTAATAGTTTTT 443065 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||||| ||||| || ||||| Sbjct 443066 CCAGTAAGTGTTTTAACGAAAATTTGCAT 443094 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| || ||||||||| || ||||| ||| ||| | | || || Sbjct 442658 ACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCCATCCTCC 442717 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||| ||||||||||| || || | |||||| || | |||| ||||| ||||| Sbjct 442718 AATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCTTGG 442777 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || || || || | || || || | ||| ||||| | || || ||||| Sbjct 442778 ATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTGATGGTTTTT 442837 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || || ||||| || ||||| Sbjct 442838 CCGGTCAAAGTCTTGACGAAGATTTGCAT 442866 >seq32 Length=411647 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||| || || ||||| || ||||| || || || | | | || || Sbjct 326042 ACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGTTCTTCCATCTTCC 325983 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||||||||| ||||| |||| | ||||||||| | ||| | ||||| ||||| Sbjct 325982 AATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGG 325923 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || || | | || || | ||||||||| | ||||||||||| Sbjct 325922 ATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTTT 325863 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || || || || |||||||| Sbjct 325862 CCTGTCAAAGTCTTGACAAAAATCTGCAT 325834 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| ||||| ||||| || || ||||| || ||||| || |||||| ||| | || Sbjct 326274 CAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGCCCATC 326215 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || ||||| ||||||||||| || || ||||||||||| | ||| | ||||| ||||| Sbjct 326214 TTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTC 326155 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || || || || || | | || || ||| ||||| | ||||| || Sbjct 326154 TTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACTTCAAGAGTAATTGT 326095 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || | || || ||||| |||||||| Sbjct 326094 TTTCCCGGTAAGAGTCTTAACGAAAATCTGCAT 326062 >seq183 Length=20465 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||| ||| |||| ||||||||| |||| |||||||||||||||||| || Sbjct 14163 CTCTCTCTTCGGAGTGCTTTGCAACTTTCCTTCACAGTACTTGTTCGCTATCGGATTCAT 14222 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||||||||||| Sbjct 14223 GGGGATATTTAGCCTTA 14239 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/79 (84%), Gaps = 5/79 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||| ||||||| || |||||||||| | |||||||| Sbjct 12142 AAGCCCGTTCCCTTGGCTGTGATTTCGCTGAATGGTAGATAGGGACAGTAGGAATCTCGT 12201 Query 25957 TAATCCTTTCATGCGCGTC 25975 |||||| ||| |||||||| Sbjct 12202 TAATCCATTCGTGCGCGTC 12220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945277298401