Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq32 176 4e-39 seq6 143 2e-29 seq2 96.9 3e-15 >seq32 Length=411647 Score = 176 bits (194), Expect = 4e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| ||| | ||||| ||||| | ||||||||||| ||| || | Sbjct 326062 ATGCAGATTTTCGTTAAGACTCTTACCGGGAAAACAATTACTCTTGAAGTCGAAGCCTCT 326121 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | ||||| || || ||||||||||| || ||||| || |||||| Sbjct 326122 GACACCATTGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAA 326181 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| |||||||| || || || || ||| || || | ||||| |||||| Sbjct 326182 CAACGTCTTATCTTTGCCGGAAAGCAATTGGAAGATGGGCGTACTTTGTCCGACTACAAC 326241 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||||||||| ||| | || || |||||| || | || ||||| Sbjct 326242 ATCCAAAAAGAATCTACCCTTCACTTGGTTTTGAGACTTCGTGGAGG 326288 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||||| || || ||||| | ||||||||||| ||| | | Sbjct 325834 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 325893 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || ||||||||||| || ||||| || |||||| Sbjct 325894 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAA 325953 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| || || ||| | ||| | ||||| |||||| Sbjct 325954 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAAC 326013 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||||||||||| ||| | || || ||| Sbjct 326014 ATCCAAAAAGAATCTACCCTTCACTTGGTT 326043 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||| | ||||| || || |||||||||| || ||| | | Sbjct 325562 ATGCAGATTTTCGTAAAAACTCTCACCGGCAAGACCATCACTCTTGAGGTTGAAGCTTCT 325621 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| ||||| ||||||||||| || ||||| || |||||| Sbjct 325622 GATACCATCGATAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGATCAA 325681 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||| | | || ||||| || || Sbjct 325682 CAAAGATTGATTTTTGCAGGTAA 325704 >seq6 Length=947499 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | ||||| || || | ||| | ||||||||| || | Sbjct 442182 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACAATTACTTTGGAAGTGGAAGCCTCG 442123 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| ||||||||||||||||| || || || || || || Sbjct 442122 GACACTATTGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAG 442063 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| |||||||| || || || ||||| || || | || || |||||| Sbjct 442062 CAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGACGGACGTACTCTTTCAGACTACAAC 442003 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 || ||||| ||||| ||| | ||||| ||| || || | || || |||| Sbjct 442002 ATCCAAAAGGAATCAACCTTGCATTTGGTTCTGAGACTTCGTGGTGGTT 441954 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| |||||||| | || || ||||| | || | || || || | || Sbjct 443094 ATGCAAATTTTCGTTAAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATCC 443035 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||||||||||||||||| || ||||| || || ||| Sbjct 443034 GACACCATCGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAA 442975 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| ||||| || || || ||||| ||| ||| ||| ||||||| ||||| Sbjct 442974 CAAAGACTTATCTTTGCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACAAT 442915 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || |||||||| || | || || ||| Sbjct 442914 ATCCAGAAAGAATCAACTCTCCACTTGGTT 442885 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| ||||| ||||| |||| || ||||| ||| | || Sbjct 442866 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAAACCATCACCCTGGAAGTCGAAGCTTCC 442807 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | ||||| || || ||||||||||| || || || || || ||| Sbjct 442806 GACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCAA 442747 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| |||||||| || || || |||||| | || | || |||||| Sbjct 442746 CAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAAC 442687 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || || ||| | ||||| || Sbjct 442686 ATCCAAAAGGAGTCAACCCTTCATTTGGT 442658 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || ||||| |||| || ||||| ||| | || Sbjct 442638 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAAACCATCACCCTGGAAGTCGAAGCTTCC 442579 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | ||||| || || ||||||||||| || || || || || ||| Sbjct 442578 GACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCAA 442519 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| |||||||| || || || |||||| | || | || |||||| Sbjct 442518 CAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAAC 442459 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || || ||| | ||||| || Sbjct 442458 ATCCAAAAGGAGTCAACCCTTCATTTGGT 442430 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| |||| || || || |||| | || || ||| | | Sbjct 443371 ATGCAAATTTTTGTAAAAACGCTAACAGGAAAGACAATCACCTTGGAGGTTGAAGCTTCG 443312 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | ||||| || |||||||||||||| || |||||||| || ||| Sbjct 443311 GATACGATCGACAACGTCAAAGCGAAGATTCAAGACAAGGAAGGAATTCCACCAGACCAA 443252 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || | || || |||||||| || Sbjct 443251 CAGAGACTCATTTTTGCCGGTAA 443229 >seq2 Length=2086053 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||||||||| | || || || || || || || Sbjct 1233527 ATGCAAATTTTCGTAAAGACCCTTACCGGTAAAACAATTACCCTCGAGGTTGAGGCCTCC 1233586 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || |||||||||||||| || ||||| || |||||| Sbjct 1233587 GACACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 1233646 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 ||| | | || |||||||| || Sbjct 1233647 CAAAGATTGATCTTTGCCGGTAA 1233669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725590630115