Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq32 145 2e-29 seq6 118 3e-21 seq16 116 9e-21 >seq32 Length=411647 Score = 145 bits (160), Expect = 2e-29 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || ||||| | || | |||| || |||||||||||| || ||||||| Sbjct 326289 TCCTCCACGAAGTCTCAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGA 326230 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| ||||| ||||| || ||||| ||||| ||||| |||||| Sbjct 326229 CAAAGTACGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTG---ATCTGG 326173 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | |||||||| || || ||||| || ||||| ||||| || || | || | ||| Sbjct 326172 GGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTC 326113 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || || || |||||||| |||||||| ||||| ||||||||| Sbjct 326112 GACTTCAAGAGTAATTGTTTTCCCGGTAAGAGTCTTAACGAAAATCTGCATT 326061 Score = 127 bits (140), Expect = 5e-24 Identities = 162/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 |||||||| || | |||| || |||||||||||| || ||||||| | || | | Sbjct 326051 AGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGTTCTT 325992 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCT 288372 || ||||| ||||||||||| || ||||| | | ||||| ||||||| |||||| Sbjct 325991 CCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTG---ATCTGGGGGAATTCCT 325935 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || || || ||||| || || || ||||| || || | || | ||| ||||| || Sbjct 325934 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAACTTCAAGA 325875 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || |||| ||||||||| || ||||||||| Sbjct 325874 GTAATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCATT 325833 >seq6 Length=947499 Score = 118 bits (130), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | |||||| || || | ||||| || || |||||||| || ||||| Sbjct 442639 TCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACT 442698 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || | || || || ||||| ||||| || ||||| || | ||||| ||||| Sbjct 442699 TAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGG---TCTGG 442755 Query 288366 ---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||||||| || || ||||| || ||||| ||||| || || | ||| | ||| Sbjct 442756 AGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTC 442815 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||| || || ||||||| |||||||||||| || |||||| Sbjct 442816 GACTTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCATT 442867 Score = 116 bits (128), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| || || | ||| | || ||| |||||||| || ||||| | Sbjct 441956 CCACCACGAAGTCTCAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGAA 442015 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || || |||||||| || ||||| ||||| || ||||| || | || || ||||| Sbjct 442016 AGAGTACGTCCGTCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGG---TCTGGA 442072 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||| || || || ||||| || || || || || |||| || | ||| Sbjct 442073 GGGATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCC 442132 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | || || ||||| ||||| ||||| ||||| || || |||||| Sbjct 442133 ACTTCCAAAGTAATTGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATT 442183 Score = 109 bits (120), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | |||||| || || | ||||| || || |||||||| || ||||| Sbjct 442411 TCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACT 442470 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || | || || || ||||| ||||| || ||||| || | ||||| ||||| Sbjct 442471 TAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGG---TCTGG 442527 Query 288366 ---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||||||| || || ||||| || ||||| ||||| || || | ||| | ||| Sbjct 442528 AGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTC 442587 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||| || || || || || ||||||||||| || |||||| Sbjct 442588 GACTTCCAGGGTGATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCATT 442639 Score = 104 bits (114), Expect = 6e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||||||||| || | || | || |||||| |||||||| ||||||| Sbjct 442867 TCCTCCTCTGAGTCTAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATATTGTAGTCGGA 442926 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 ||| || || || ||||||||||| ||||| || ||||| || | ||||| ||| Sbjct 442927 GAGGGTACGGCCATCTTCTAATTGCTTTCCAGCAAAGATAAGTCTTTGTTG---GTCTGG 442983 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || |||||||| || || || ||||| || || || || || || | ||| | || Sbjct 442984 AGGAATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCGATGGTGTCGGATGCCTC 443043 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | || || || || || || || || || ||||| || |||||| Sbjct 443044 AACCTCCAAGGTAATAGTTTTTCCAGTAAGTGTTTTAACGAAAATTTGCATT 443095 Score = 87.8 bits (96), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | || | || ||||||||||| ||||| || ||| Sbjct 442220 TCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAG 442279 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||||| ||| |||||||||||||| || ||||| || || || || Sbjct 442280 ATAAGTCTTTGTTG---GTCTGGAGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACA 442336 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || | || || || || || || || |||||| Sbjct 442337 TTATCGATGGTGTCAGATGCCTCAACCTCCAAGGTAATAGTTTTTCCAGTAAGGGTCTTG 442396 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 442397 ACGAAGATCTGCATT 442411 >seq16 Length=590713 Score = 116 bits (128), Expect = 9e-21 Identities = 375/578 (65%), Gaps = 8/578 (1%) Strand=Plus/Minus Query 72220 ATGGAGATCTGACCGATTCGTCTAGTTTGATTCATATAATCACCAAGATTCGTCCGGACG 72279 |||||||| |||||||||| || |||| ||| | || || | || | | || | | Sbjct 481884 ATGGAGATATGACCGATTCTTCCTGTTTAATTAAAATTATTTCAAAAGTCCAACCTGCTG 481825 Query 72280 AAATCTACAATTTGGCCGCACAATCGTTTGTTCATGATAGTTTTAATCAAGCCGAGGTGA 72339 |||| ||| |||| || || || || ||| | | |||||| | | ||| | Sbjct 481824 AAATTTACCATTTAGCTGCCCAGTCTCATGTGAAAGTTAGTTTCGAGTTGCCAGAGTATA 481765 Query 72340 CTGCAAACGTAGATGCTCTCGGTGTTTTGCGTTTACTAGACGCCGTTCGTATATCGGG-- 72397 | || | || |||||| | || ||||||||| | || || ||| | | || Sbjct 481764 CAGCTGAAGTTGATGCTGTTGGAACTTTGCGTTTGTTGGATGCGGTTGTTGCTTGTGGAT 481705 Query 72398 TGTCAACTC----TCGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAG 72453 || || | ||| ||| ||||| || | || |||||||||||||| || ||| Sbjct 481704 TGCAAAGTAAAGTTCGTTTTTATCAAGCTTCGACCTCTGAGTTGTATGGAAAGGTTCAAC 481645 Query 72454 AAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGT 72513 |||| ||||| | || | ||||| |||||||| |||| ||||| | ||||||||||| Sbjct 481644 AAATCCCTCAATCTGAGACAACTCCATTTTATCCAAGAAGTCCTTATGCTGTTGCAAAGT 481585 Query 72514 TGTACGCTTATTGGATCTGT-AAAAATTACCGTGAGTCGTATAACATGTATGTATGCAAC 72572 |||| ||||||||||| ||| || ||||| | || | || || | || || || Sbjct 481584 TGTATGCTTATTGGAT-TGTCAAGAATTATAGAGAAGCTCATGGTATTTTTGGATCTAAT 481526 Query 72573 TCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATC 72632 || || |||||||| ||| | | || | | ||||| || || || || Sbjct 481525 GGTATCCTCTTTAATCACGAATCTCCAAGACGTGGTCCTTCTTTCGTAACCCGAAAGATT 481466 Query 72633 ACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATA 72692 || || || || ||| ||| || | ||||| | | || || || || Sbjct 481465 ACTCGTTCTGTTGCAAAAATTAGTCTTGGGTTCCAGGAATGCGTCTCCCTAGGCAACATC 481406 Query 72693 GATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTG 72752 || | || ||||||||||| |||| ||||| || || || || |||||| || || Sbjct 481405 GACTCTAAGAGAGATTGGGGGCATGCTAAGGAATATGTGGAGGCTATGTGGAGAATTCTT 481346 Query 72753 CAACAAGATACTCCGGATGACTATGTGATTGCAACAGG 72790 ||||| | | ||||||| ||| ||||| || || Sbjct 481345 CAACACACTGAAGCTGATGACTTTGTCATTGCCACCGG 481308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179647281154338