Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq16 113 1e-19 seq30 86.0 1e-11 >seq16 Length=590713 Score = 113 bits (124), Expect = 1e-19 Identities = 374/578 (65%), Gaps = 8/578 (1%) Strand=Plus/Minus Query 68209 ATGGAGATCTGACCGATTCGTCTAGTTTGATTCATATAATCACCAAGATTCGTCCGGACG 68268 |||||||| |||||||||| || |||| ||| | || || | || | | || | | Sbjct 481884 ATGGAGATATGACCGATTCTTCCTGTTTAATTAAAATTATTTCAAAAGTCCAACCTGCTG 481825 Query 68269 AAATCTACAATTTGGCCGCACAATCGTTTGTTCATGACAGTTTTAATCAAGCCGAGGTGA 68328 |||| ||| |||| || || || || ||| | | ||||| | | ||| | Sbjct 481824 AAATTTACCATTTAGCTGCCCAGTCTCATGTGAAAGTTAGTTTCGAGTTGCCAGAGTATA 481765 Query 68329 CTGCAAACGTAGATGCTCTCGGTGTTTTGCGTTTACTAGACGCCGTTCGTATATCGGG-- 68386 | || | || |||||| | || ||||||||| | || || ||| | | || Sbjct 481764 CAGCTGAAGTTGATGCTGTTGGAACTTTGCGTTTGTTGGATGCGGTTGTTGCTTGTGGAT 481705 Query 68387 TGTCAACTC----TCGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAG 68442 || || | ||| ||| ||||| || | || |||||||||||||| || ||| Sbjct 481704 TGCAAAGTAAAGTTCGTTTTTATCAAGCTTCGACCTCTGAGTTGTATGGAAAGGTTCAAC 481645 Query 68443 AAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGT 68502 |||| ||||| | || | ||||| |||||||| |||| ||||| | ||||||||||| Sbjct 481644 AAATCCCTCAATCTGAGACAACTCCATTTTATCCAAGAAGTCCTTATGCTGTTGCAAAGT 481585 Query 68503 TGTACGCTTATTGGATCTGT-AAAAATTACCGTGAGTCGTATAACATGTATGTATGCAAC 68561 |||| ||||||||||| ||| || ||||| | || | || || | || || || Sbjct 481584 TGTATGCTTATTGGAT-TGTCAAGAATTATAGAGAAGCTCATGGTATTTTTGGATCTAAT 481526 Query 68562 TCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATC 68621 || || |||||||| ||| | | || | | ||||| || || || || Sbjct 481525 GGTATCCTCTTTAATCACGAATCTCCAAGACGTGGTCCTTCTTTCGTAACCCGAAAGATT 481466 Query 68622 ACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATA 68681 || || || || ||| ||| || | ||||| | | || || || || Sbjct 481465 ACTCGTTCTGTTGCAAAAATTAGTCTTGGGTTCCAGGAATGCGTCTCCCTAGGCAACATC 481406 Query 68682 GATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTG 68741 || | || ||||||||||| |||| ||||| || || || || |||||| || || Sbjct 481405 GACTCTAAGAGAGATTGGGGGCATGCTAAGGAATATGTGGAGGCTATGTGGAGAATTCTT 481346 Query 68742 CAACAAGATACTCCGGATGACTATGTGATTGCAACAGG 68779 ||||| | | ||||||| ||| ||||| || || Sbjct 481345 CAACACACTGAAGCTGATGACTTTGTCATTGCCACCGG 481308 >seq30 Length=447140 Score = 86.0 bits (94), Expect = 1e-11 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 243511 GAAGCAGTTGAAAACGAAAAGGAATTCATTTGC--GACGCTATTCCATGCCGGCTTATTG 243568 ||||| ||||||| |||||||||||| |||| || || | |||||| ||| | | Sbjct 100677 GAAGCCGTTGAAATCGAAAAGGAATT--TTTGACGGAGTCTCTACCATGCTCTCTTCTCG 100620 Query 243569 GCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCG 243628 | ||||| || || ||| || |||||||||| ||| ||||| | | |||| Sbjct 100619 GAATGAATCACGACCTTATGTCTCAATACATCGAATACGTTGCCGATCATCTACTCATGA 100560 Query 243629 CGCTTGGTTATGAG-AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 | ||||| | ||| |||||| | || || || |||| |||||||| || Sbjct 100559 C-CTTGGAACTACCCAAAAAATACAACACTAAAAATCCTTTTGAGTTTATGGAAAATATC 100501 Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAAC 243739 || | |||||||||||||| |||||||||| | || | ||| ||||||| Sbjct 100500 TCCTTGCAAGGGAAAACTAATTTCTTCGAAAGAAGAGTAACTGAATATCAAC 100449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873344463850