Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq30 104 3e-17 seq108 96.9 4e-15 seq76 89.7 6e-13 seq13 89.7 6e-13 seq2 84.2 3e-11 >seq30 Length=447140 Score = 104 bits (114), Expect = 3e-17 Identities = 242/364 (66%), Gaps = 6/364 (2%) Strand=Plus/Plus Query 114273 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 114332 |||| || || |||| || | |||||||| || | |||||| || | ||||||||||| Sbjct 97979 ACAACATGAAAGCATCAGCTAATCCTTGGACCCCCAAGCCAATAGGCCTATGTCTCATAT 98038 Query 114333 TAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTT 114392 | || |||| ||| || || ||| |||| ||| ||||| | || | ||| | Sbjct 98039 TTGAGTTTCTAGCTTCAGGAACAGGGTAATAATTGACATCAATAACTTTGTTCAAATTCT 98098 Query 114393 TGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGC-----GAGTCTC 114447 | || | |||||| | | || ||||||||| ||||| | | | | ||| Sbjct 98099 TCGTAATAACCTTAGCAACTTGATGAAGCTTGGGATAATCCATTGTTCTTTTTGCATCTT 98158 Query 114448 T-TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 114506 | ||||| ||| | || | ||| ||||| || | |||||| || | | ||||| Sbjct 98159 TATCATTAACAAATTTGTTCAAGGCAATTGAAGCTAAATTACAAACTGCGACTTCATCAG 98218 Query 114507 TATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCT 114566 | || ||||| | |||||| || |||||||| || | || || || || | || | Sbjct 98219 GAGAAGAGTACTGAACAATTTCAGTGCACAAATTAGAGCATTTGATAGTTCCAAGATTTT 98278 Query 114567 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCG 114626 ||| || ||| |||| || ||||| |||||||| ||||| || | || || || Sbjct 98279 GTTGGTTACTTTTTCTGTTGCAAGCATCTTTGTAAAGAATGTAGGGGTTTCCTGTTTCAA 98338 Query 114627 TTTG 114630 |||| Sbjct 98339 TTTG 98342 >seq108 Length=67188 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 113669 GTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCC 113728 ||||| |||| | |||||| ||||||||||| || || |||||| || |||||||||| Sbjct 7149 GTTGGTTTTTCTACGAAGAGATTCATACTTTGAGACTGGTCGATGTAGGCTCCACGATCC 7090 Query 113729 GCCGCCATATCAATCACATC-CTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTT 113787 || |||||| | || | || ||| | | | ||| ||||||| |||| || | ||| Sbjct 7089 GCTGCCATACCCATTAATTCTCTTTGAC-TCAGTTCATACACAGTCTTGTAAAGTTCCTT 7031 Query 113788 AATATCATCTGGGATATCCACGATATTTTGGATGGAGCCA 113827 |||||| || || || |||||||||| ||||| ||| Sbjct 7030 AATATCCGAGGGAATTTCTTCGATATTTTGAATGGATCCA 6991 >seq76 Length=128862 Score = 89.7 bits (98), Expect = 6e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 113699 TGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG 113758 || |||||||||||||| ||||||||| || ||||||| | | |||||| || Sbjct 12524 TGAGATTGATCGATGAATGCTCCACGATCAGCTGCCATATTTAAGATATCCTTTTGACTG 12583 Query 113759 ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG 113818 |||||||| || ||| |||| || | |||||| |||| ||| || || | || ||||| Sbjct 12584 ATTTCCCAGACTGTTTTGTAAAGTTCCTTAATTTCATTTGGAATTTCGGCAATCTTTTGA 12643 Query 113819 ATGGAGCCACCCGC 113832 || || ||||| || Sbjct 12644 ATAGACCCACCTGC 12657 >seq13 Length=696343 Score = 89.7 bits (98), Expect = 6e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 113676 TTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCA 113735 |||| | || || ||||| || |||||||||||||| ||||||||| || |||| Sbjct 649480 TTTCTACAAATAGATTCATTGACTGAGATTGATCGATGAATGCTCCACGATCAGCTGCCA 649539 Query 113736 T-ATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCA 113794 | || ||| | ||| ||| ||||||||||||| ||| | || || | |||||| ||| Sbjct 649540 TAATTAAT-ATATCTTTCTGACTGATTTCCCACACTGTTTTATAAAGTTCCTTAATTTCA 649598 Query 113795 TCTGGGATATCCACGATATTTTGGATGGAGCCACCCGC 113832 | ||| || || | || ||||| || || ||||| || Sbjct 649599 TTTGGAATTTCGGCAATCTTTTGAATAGACCCACCTGC 649636 >seq2 Length=2086053 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 172588 TGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGAACCATCGTTATC 172647 ||||||| | ||||||| | ||| | |||||||||||||||||| || ||||| | ||| Sbjct 276090 TGGCCAGTTGCAGTGGATGAAATTGATGATGAGACCCTTAATGTGGGATCCATCCTGATC 276149 Query 172648 CGCATCCGTCATAATCATAAGCCGACCATAGCGAAG 172683 ||| | ||||||||||| ||||| || ||||| Sbjct 276150 TTGATCGGCCATAATCATAATGCGACCGTACCGAAG 276185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350083080680