Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq76 141 9e-29 seq13 140 3e-28 seq6 129 6e-25 seq32 105 7e-18 >seq76 Length=128862 Score = 141 bits (156), Expect = 9e-29 Identities = 524/807 (65%), Gaps = 17/807 (2%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || ||||| || ||||| ||||| || || | |||||| |||||||| | ||| Sbjct 13307 GATGCCAAATTACAAACAGCAATCTCCTCGGGTGATGAGTATTGAACAATTTCAGTGCAG 13366 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 | || |||| ||| || || || |||| ||||| ||| ||||||| || || Sbjct 13367 AGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCTTTTTCTGTTGCAGGCATCC 13426 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAAT-TGTGCGAAACAG 154765 || |||||||||| || | || ||||| | ||| |||||| ||| | | |||| Sbjct 13427 TTAAACAAAATGTAAGGAGCTCCTGTTTCAATTTGATTTTCAACAATCTTTTTGAAA--- 13483 Query 154766 ACTTCGC--GCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGT 154823 ||||| | |||| ||||||| ||||| || | |||||| |||| || ||| Sbjct 13484 ACTTCTCTTGCCTTAACTTGAACTCGAAATCTGCCCTCATTTTCATATCGTTCATAAAGT 13543 Query 154824 TTTTCAAACTC-TAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAA 154882 || || || | | | ||| || | || || ||||| || || |||||||| Sbjct 13544 GCCTCGAATTCCTGACCCCAACAA-TCAGCTAAGCCTGGACATTCGTGTGGGCACATCAA 13602 Query 154883 TGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTA 154942 |||||||| | | || | | ||||||||||||||| || |||||||| |||| Sbjct 13603 AGACCACATACCATCGGTTTCAGCTCTTTTCATAAACAAATCAGGGACCCACAACCCGTA 13662 Query 154943 CAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTC-GCTTTAAATTCAAAAAAT 155001 ||||| |||||||| ||| || | |||| ||| |||||| | |||||| | Sbjct 13663 AAACAAGTCACGCGCACGATTGCTATCTG-TTCCATCATTCTTCTTTAATTCCAAAAATT 13721 Query 155002 CATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGT---TTTC 155058 || |||| || || ||||| || || | || | ||| | || ||| | | || | Sbjct 13722 CAAATATATCAGCATGCCAGGGTTCAAGGTAAATGGCAAAAGCACCTGGTCTTTTATTAC 13781 Query 155059 CTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGC 155118 ||||||| | || | | | || || | || | | || ||| | | || Sbjct 13782 CTCCTTGGTTGACATATCTTGCTGTGTTGTTAAATACTTGGAGCATTGGAACTAAACCAT 13841 Query 155119 TGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAA 155178 | | ||| || || ||| ||| || | || ||| || ||||| || | Sbjct 13842 TAGAAACGCCATTCGTTCCATTTATGGCAGTTCCTTTAGCTCGAATACAGTGAACGTTCA 13901 Query 155179 CGCCCAAACCTCC-GCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATT 155237 || | ||||| |||| |||| || ||| ||||| | | ||||| || | ||| Sbjct 13902 ATCCTATTCCTCCTGCCG-ATTTCGAAATTAAGGCACATTGAGATAAAGTGTCAAAAATT 13960 Query 155238 CCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGG 155297 |||||||| || || || |||||||| ||||| ||| |||||||||| |||| Sbjct 13961 CCTTTGATTGAATCCTCAGACATAGTCAACAAAAAACAAGAACATAATTGAGGAGTAGGG 14020 Query 155298 CAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAA-CATTTTGTTGGCGGTTAAGTT 155356 || || ||| | || ||| |||| || ||||| |||||| | | ||| || Sbjct 14021 GTTCCTGCGTTAAAAAGAGTTGGAGTAGCATGCGTAAACCATTTTTCAGACATGTAA-TT 14079 Query 155357 GTAAGTTTCGATGGCGGCGTCAATGTC 155383 ||| ||||| || || || |||||||| Sbjct 14080 GTATGTTTCAATAGCAGCTTCAATGTC 14106 >seq13 Length=696343 Score = 140 bits (154), Expect = 3e-28 Identities = 502/771 (65%), Gaps = 28/771 (4%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || ||||| || ||||| ||||| || || | |||||| |||||||| | ||| Sbjct 650286 GATGCCAAATTACAAACAGCAATCTCCTCGGGTGATGAGTATTGAACAATTTCAGTGCAG 650345 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 | || |||| ||| || || || |||| ||||| ||| ||||||| || || Sbjct 650346 AGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCTTTTTCTGTTGCAGGCATCC 650405 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAAT-TGTGCGAAACAG 154765 || |||||||||| || | || ||||| | ||| |||||| ||| | | |||| Sbjct 650406 TTAAACAAAATGTAAGGAGCTCCTGTTTCAATTTGATTTTCAACAATCTTTTTGAAA--- 650462 Query 154766 ACTTCGC--GCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGT 154823 ||||| | |||| ||||||| ||||| || | |||||| |||| || ||| Sbjct 650463 ACTTCTCTTGCCTTAACTTGAACTCGAAATCTGCCCTCATTTTCATATCGTTCATAAAGT 650522 Query 154824 TTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAAT 154883 || || ||| || | || | || || ||||| || || |||||||| Sbjct 650523 GCCTCGAATTCTTGACCCCAACAATCAGCTAAGCCTGGACATTCGTGTGGGCACATCAAA 650582 Query 154884 GACCACATT---TCGTTTT--GTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAG 154938 |||||||| ||| ||| ||| | ||||||||||||||| || |||||||| Sbjct 650583 GACCACATACCATCGGTTTCAGTTCT-----TTTCATAAACAAATCAGGGACCCACAACC 650637 Query 154939 CGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATT-CAAA 154997 |||| ||||| ||||| || ||| || | |||| ||| ||| |||| |||| Sbjct 650638 CGTAAAACAAGTCACGTGCACGATTGCTGTCTG-TTCCATCATTCTTTTTTAATTCCAAA 650696 Query 154998 AAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGT--- 155054 || ||| |||| || || ||||| || || | || | ||| | || ||| | | Sbjct 650697 AATTCAAATATATCAGCATGCCAGGGTTCAAGGTAAATGGCAAAAGCACCTGGTCTTTTA 650756 Query 155055 TTTCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACG 155114 || |||||||| || || | | | || || | || | | || ||| | | Sbjct 650757 TTACCTCCTTGGTCGACATATCTTGCTGTGTTGTTAAATACTTGGAGCATTGGAACTAAA 650816 Query 155115 CCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACA 155174 || | | ||| || || ||| ||| || | || ||| || ||||| Sbjct 650817 CCATTAGAAACGCCATTCGTTCCATTTATGGCAGTTCCTTTAGCTCGAATACAGTGAACG 650876 Query 155175 TTAACGCCCAAACCTCC-GCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTA 155233 || | || | ||||| |||| |||| || ||| ||||| | | ||||| ||| | Sbjct 650877 TTCAATCCTATTCCTCCTGCCG-ATTTCGAAATTAAGGCACATTGAGATAAAGTGTCGAA 650935 Query 155234 CATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAG--GT 155291 ||||||||||| |||||| || |||||||||||||| ||||| ||||||| || Sbjct 650936 AATTCCTTTGATTGAGTCTTCAGACATTGTCAACAAGAAACAAGAAGACAATTGAGGAGT 650995 Query 155292 TGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAA-CATTTT 155341 | | | || || ||| | ||||| ||||||| ||||| |||||| Sbjct 650996 TAAAG--TTCCTGCGTTAAACAGAGTAGGTGTAGCGTGGGTAAACCATTTT 651044 >seq6 Length=947499 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| || || | ||| | || ||||| ||||| |||||||| |||| Sbjct 441955 ACCACCACGAAGTCTCAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGA 442014 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| || | ||||| |||||| | || || | |||||||| ||||| Sbjct 442015 AAGAGTACGTCCGTCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGG 442074 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||| || ||||| ||||| ||| ||| || | || || ||| ||||| Sbjct 442075 GATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCAC 442134 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | ||| | ||||| ||||| | |||||| || |||||||||||| Sbjct 442135 TTCCAAAGTAATTGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATT 442183 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 |||||| || | || | || |||||||| || || ||||| || | || ||| || | Sbjct 442879 TCTAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATATTGTAGTCGGAGAGGGTACGGCC 442938 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | ||||| || ||| | || || | || ||||| |||||||||||||| || Sbjct 442939 ATCTTCTAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGAATTCCTTCCTT 442998 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| ||||| ||| ||| || | || || || || || || | || | Sbjct 442999 GTCTTGAATTTTGGCCTTGACATTATCGATGGTGTCGGATGCCTCAACCTCCAAGGTAAT 443058 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || || | ||||| ||||||||||||||| Sbjct 443059 AGTTTTTCCAGTAAGTGTTTTAACGAAAATTTGCATT 443095 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || || | ||||| || || || ||||| |||||||| || | || | | | Sbjct 442651 TCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCC 442710 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 || || | ||||| |||||| | || || | || ||||| ||||| |||||||| || Sbjct 442711 ATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCCTT 442770 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 ||||| || || ||||| || || | || || || || ||||| | || | Sbjct 442771 GTCTTGGATCTTA-GCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTGA 442829 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || ||||||||||| || ||||| ||||||||| Sbjct 442830 TGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCATT 442867 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||||||| | || | ||||| || || || ||||| |||||||| || Sbjct 442184 CCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACTT 442243 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | | ||||| | ||||| |||||| | || || | || ||||| ||||| Sbjct 442244 AAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGG 442303 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| ||||| || || ||| ||| || | || ||| || || || Sbjct 442304 ATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGATGCCTCAACC 442363 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | || || || || | || || ||||| || |||||| Sbjct 442364 TCCAAGGTAATAGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCATT 442411 >seq32 Length=411647 Score = 105 bits (116), Expect = 7e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||||||||| |||||||| || | | || ||| | ||||| | ||| Sbjct 326264 TGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGCCCATCTTCCAATTGC 326205 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || || || || || || || ||||||||||| || ||||| | | || Sbjct 326204 TTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGGA-TCTT 326146 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| || || | || ||| ||| || ||||| | ||| | || || ||||| Sbjct 326145 GGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACTTCAAGAGTAATTGTTTTCCCGGT 326086 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | ||| || |||||||| |||||| Sbjct 326085 AAGAGTCTTAACGAAAATCTGCATT 326061 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| || ||| |||| | | || || || |||||||||||||| || ||||| ||||| Sbjct 325705 CTTACCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTT 325646 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| ||| || | |||||| || || || || | ||| | |||||||||||| Sbjct 325645 GGCCTTGACATTATCGATGGTATCAGAAGCTTCAACCTCAAGAGTGATGGTCTTGCCGGT 325586 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | ||||||||||||||| |||||| Sbjct 325585 GAGAGTTTTTACGAAAATCTGCATT 325561 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 |||||| || | |||| || ||||||||||| |||||||| || | | ||| | | Sbjct 326049 TCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGTTCTTCC 325990 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | || || || ||| | || | | || || || || ||||||||||| || Sbjct 325989 ATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGGGAATTCCTTCCTT 325930 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| || || ||| || || | || ||| || || ||||| | ||| | Sbjct 325929 GTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAACTTCAAGAGTAAT 325870 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || |||||||| || || ||||| |||||| Sbjct 325869 AGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCATT 325833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641858341240