Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 113 4e-20 seq32 100 3e-16 >seq6 Length=947499 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| | ||| || ||||| | ||||||||||||| ||||||||||| || Sbjct 442184 CCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACTT 442243 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | || || | ||| || |||| | |||| || | |||||||| ||||| Sbjct 442244 AAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGG 442303 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| || || | | || | |||||| | | ||| ||| Sbjct 442304 ATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGATGCCTCAACC 442363 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||| || || || || || |||||||| Sbjct 442364 TCCAAGGTAATAGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 442410 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | ||||||||||||| ||||||||||| || | ||| | | ||||| Sbjct 442430 ACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCCATCCTCC 442489 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | ||| || |||| | |||| || | |||||||| ||||| || ||||| ||||| | Sbjct 442490 AATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCTTGG 442549 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 || || ||| | | || | |||||||| | || || || | || | ||||| Sbjct 442550 ATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTGATGGTTTTT 442609 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || || || || || || ||||| Sbjct 442610 CCAGTAAGGGTCTTGACGAAGATTTGCAT 442638 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | ||||||||||||| ||||||||||| || | ||| | | ||||| Sbjct 442658 ACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCCATCCTCC 442717 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 | ||| || |||| | |||| || | |||||||| ||||| || ||||| ||||| | Sbjct 442718 AATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCTTGG 442777 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 || || ||| | | || | |||||||| | || || || | || | ||||| Sbjct 442778 ATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTGATGGTTTTT 442837 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || |||| ||| || || || || ||||| Sbjct 442838 CCGGTCAAAGTCTTGACGAAGATTTGCAT 442866 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 || ||| ||||| | | |||| |||||||| ||||||||||| | |||||| ||| Sbjct 441970 CAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGAAAGAGTACGTCCGTC 442029 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 ||| | ||| || |||| | |||| || | || ||||| ||||| || ||||| ||||| Sbjct 442030 CTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCCTTCCTTGTC 442089 Query 138522 GGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 ||| |||| | || | | || | ||||| | | ||||| || | || | | Sbjct 442090 -TTGAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCACTTCCAAAGTAATTG 442148 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || |||||||| |||||||| ||||| Sbjct 442149 TCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 442182 >seq32 Length=411647 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 |||||| || || | | | || || ||||| |||||||||||| || ||||||| || Sbjct 326274 CAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGCCCATC 326215 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || | ||| || |||| | |||| ||||| ||||| || || || || ||||| ||||| Sbjct 326214 TTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTC 326155 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || ||| | | || | |||||| | | || || || | || | || Sbjct 326154 TTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACTTCAAGAGTAATTGT 326095 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || ||||| || || ||||||||||| Sbjct 326094 TTTCCCGGTAAGAGTCTTAACGAAAATCTGCAT 326062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259478255120