Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq32 98.7 9e-16 >seq32 Length=411647 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 ||||| || || | || ||| ||||| || | ||||| |||||||| || ||||| ||| Sbjct 326291 GCTCCTCCACGAAGTCTCAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCG 326232 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || | || ||||| || |||| | || || ||||| || Sbjct 326231 GACAAAGTACGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGG 326172 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || || || |||||||| ||| || |||| ||||| | | |||||| | || Sbjct 326171 GGAATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTGT-CAATGGTGTCAGAGGCTTC 326113 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| | || | ||||| ||||| ||||| || || ||||||||||| Sbjct 326112 GACTTCAAGAGTAATTGTTTTCCCGGTAAGAGTCTTAACGAAAATCTGCAT 326062 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||||| |||||||| || ||||| ||| | || | ||| || Sbjct 326042 ACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGTTCTTCCATCTTCC 325983 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||||||||||| |||| |||| || ||||| || || || || |||||||| | Sbjct 325982 AATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGG 325923 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||||| ||||| | | |||||| | | || ||||| | || | ||||| Sbjct 325922 ATCTTGGCCTTGACGTTGT-CAATGGTGTCAGAAGCTTCAACTTCAAGAGTAATAGTTTT 325864 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| || |||||||||||||| Sbjct 325863 TCCTGTCAAAGTCTTGACAAAAATCTGCAT 325834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498000489040