Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq32 122 8e-23 seq30 116 3e-21 seq2 102 7e-17 >seq6 Length=947499 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| || | || | ||| || ||||| ||||||||||| || || || Sbjct 442637 ATTCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCA 442696 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | ||| |||||||| ||||| || | || | || ||| ||||| || Sbjct 442697 CTTAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGA 442756 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || ||||| || || ||||| || | || | ||||||||||| || Sbjct 442757 GGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGA-CGTTGTCGATGGTGTCGGAAGCTTC 442815 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || | ||||| ||||| | ||| || || || |||||||| Sbjct 442816 GACTTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 442866 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| || | || | ||| || ||||| ||||||||||| || || || Sbjct 442409 ATTCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCA 442468 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | ||| |||||||| ||||| || | || | || ||| ||||| || Sbjct 442469 CTTAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGA 442528 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || ||||| || || ||||| || | || | ||||||||||| || Sbjct 442529 GGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGA-CGTTGTCGATGGTGTCGGAAGCTTC 442587 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || | ||||| || || || || || || || |||||||| Sbjct 442588 GACTTCCAGGGTGATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 442638 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| || | || | || || |||||||| || |||||||| || ||| Sbjct 442865 ATTCCTCCTCTGAGTCTAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATATTGTAGTCG 442924 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || ||||| ||||| || | || | || ||| ||||| || Sbjct 442925 GAGAGGGTACGGCCATCTTCTAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGGTCTGGA 442984 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || ||||||||||| |||| || | ||||||||| | ||| Sbjct 442985 GGAATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCGATGGTGTCGGATGCCTCA 443044 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||||| || || || ||||| || ||||||||||| Sbjct 443045 ACCTCCAAGGTAATAGTTTTTCCAGTAAGTGTTTTAACGAAAATTTGCAT 443094 Score = 114 bits (126), Expect = 1e-20 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || |||| || | ||||| ||||||||||||||||| || || || || Sbjct 441956 CCACCACGAAGTCTCAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTC--TG 442013 Query 45174 ACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | | | | || |||||||| ||||| || | || | || ||||||||| || | Sbjct 442014 AAAGAGTACGTCCGTCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAG 442073 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | || ||||| || ||||||||||| |||| || | ||||| || | || | Sbjct 442074 GGATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCA 442133 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| | ||||| || || ||||| |||||||| |||||||||||||| Sbjct 442134 CTTCCAAAGTAATTGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 442182 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || | ||||| || | ||| || ||||| ||||||||||| || || || Sbjct 442181 ATTCCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCA 442240 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | ||| || ||||| ||||| || | || | || ||| ||||| || Sbjct 442241 CTTAAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGA 442300 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| || || |||| || | |||||| || | ||| Sbjct 442301 GGGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGATGCCTCA 442360 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| ||||| || || || || || || || || ||||| Sbjct 442361 ACCTCCAAGGTAATAGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 442410 >seq32 Length=411647 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || || | || | || || || ||||| |||||||| || || ||| Sbjct 326063 ATTCCTCCTCTAAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCG 326004 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| |||||||||||||| || | || |||| ||| || || || Sbjct 326003 GATAAGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGG 325944 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || ||||| || || |||| || | || | |||||| |||| || Sbjct 325943 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAAGCTTC 325885 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||| ||||| || || | ||| || |||||||| ||||| Sbjct 325884 AACTTCAAGAGTAATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 325834 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | ||||||| ||| || || || ||||| ||||| || ||||| ||||| Sbjct 325704 TTACCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTTG 325645 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | ||| || |||| || || || ||||| | || |||||||| Sbjct 325644 GCCTTGACATTATCGATGGTATCAGAAGCTTCAACCTCAAGAGTGATGGTCTTGCCGGTG 325585 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| ||||| ||||| Sbjct 325584 AGAGTTTTTACGAAAATCTGCAT 325562 >seq30 Length=447140 Score = 116 bits (128), Expect = 3e-21 Identities = 548/861 (64%), Gaps = 21/861 (2%) Strand=Plus/Minus Query 122918 ACATATGCTCATGCGCGTCGCTATAGGCGTGCAC--GGACGCGACATCGAAAACGCGACC 122975 ||||||| | ||||| || || | ||| | ||| ||| | ||||| | ||| | | Sbjct 99027 ACATATGATTATGCGTGTTGCCGTTGGCATTCACAAGGATG--ACATCAATGGCGCTATC 98970 Query 122976 GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCC 123035 ||||| ||| ||||||||||| | |||| || || ||||| | ||||||| | ||| | Sbjct 98969 GAAACCTACAATTTGATGTCTGAGAAATGGTTTACTCACGCCACTCCCACTCTTTTCAAC 98910 Query 123036 GCCGGCACGAAGT-TGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAG 123094 ||||| || | || ||||| ||||||| || |||||||| || || || Sbjct 98909 GCCGGAAC-ATGTACACCTCAACTGTCTTCATGCTTTTTGCTGACTATGTCTTCTGATTC 98851 Query 123095 CATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGG 123154 || | || || | || || ||| | || || |||||||| |||| || || || Sbjct 98850 GATTAAAGGAATTTTCGACACCTTGTCTCAATGTGCATTGATTTCAAAATCTGCAGGTGG 98791 Query 123155 CATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC-ATCAGAAGCACCGACG 123213 || ||| |||| || || | ||| || || | || || | | || | | Sbjct 98790 AATTGGCTTGAATGTCCATTGTATCAGA-GCTAAGGGGTCAGCTATTAATGGAACTAATG 98732 Query 123214 GAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCG 123273 |||| | || || | | ||| ||| || | |||||| ||| | | || | Sbjct 98731 GAATTTCAAATGGACTTGTCCCTATGTTGCAGGTCTTCAATAATACCGCTAAGTATGTTG 98672 Query 123274 ACCAGGGCGGCAAACGCAAA------GGCGCGATGGCGATCTATCTAGAACCGTGGCACG 123327 | || || ||||| |||| || || | || || ||||||||||| ||||| | Sbjct 98671 ATCAAGGAGGCAA---CAAAAGACCTGGTGCTTTTGCCATTTATCTAGAACCTTGGCATG 98615 Query 123328 TTGATGTGTACGATTTTTTAAATTTAAAACGCAACATG--GGGGCGGAAGAAAAGAAAGC 123385 |||| | | |||||| ||| | ||| | || ||| || | ||| || || Sbjct 98614 CTGATATCTTCGATTTCTTAGAGTTACGA--AAAAATGATGGAACTGAATCTAATCGTGC 98557 Query 123386 CCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGA 123445 || |||||||| || | ||||| | || || | |||||| | | | ||| ||| Sbjct 98556 ACGTGATTTGTTTTATGGGCTATGGATTCCTGACCTTTTTATGAAAAGAGCCAAATCCGA 98497 Query 123446 CGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAA 123505 || | ||||||| || |||||||| || || || |||||| ||| | || | Sbjct 98496 CGACATGTGGTCCCTTATGTGTCCTAATGAATGCCCTGGCTTGGCCGATTGCTGGGGACA 98437 Query 123506 TCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGTCAGGTTCC 123565 | || || | || |||| |||| || | |||| ||| | ||| || Sbjct 98436 AGAATTCGAAGCCTTATACGTTAAATATGAACTCGAAAAGAAATATCGAGTTCAAGTCAG 98377 Query 123566 GGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACAT 123625 ||| | | | | || || || ||||| ||| | ||||| |||| || ||||| Sbjct 98376 AGCAAGAGCTCTTTTGAAGAAGATAGCCGAAAGTCAAATTGAAACAGGAAACCCCTACAT 98317 Query 123626 GCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATG 123685 || |||||||| || |||||||| |||| || || || | ||||| || ||||| Sbjct 98316 TCTTTACAAAGATGCTTGCAACAGAAAAAGTAACCAACAAAATCTTGGAACTATCAAATG 98257 Query 123686 TAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAA 123745 |||| | ||| | |||||| | | ||| | | ||| |||| || || ||||| Sbjct 98256 CTCTAATTTGTGCACTGAAATTGTTCAGTACTCTTCTCCTGATGAAGTCGCAGTTTGTAA 98197 Query 123746 TTTGGCTTCGATTTGCGTGAA 123766 ||| ||||| ||| | |||| Sbjct 98196 TTTAGCTTCAATTGCCTTGAA 98176 >seq2 Length=2086053 Score = 102 bits (112), Expect = 7e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||||| ||| || || || ||||| ||||| || |||||||| || ||||| | Sbjct 1233657 ATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATCTTGGCTTTGACATTT 1233598 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||||||||| | ||| || ||||| |||| ||||| ||||| || || ||||| Sbjct 1233597 TCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATTGTTTTACCGGTAAGGGTCTTTACG 1233538 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 1233537 AAAATTTGCAT 1233527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000538831160