Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq30 95.1 1e-14 seq76 93.3 5e-14 seq13 93.3 5e-14 seq108 87.8 2e-12 seq2 84.2 3e-11 >seq30 Length=447140 Score = 95.1 bits (104), Expect = 1e-14 Identities = 240/364 (66%), Gaps = 6/364 (2%) Strand=Plus/Plus Query 116234 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 116293 |||| || || |||| || | |||||||| || | |||||| || | ||||||||||| Sbjct 97979 ACAACATGAAAGCATCAGCTAATCCTTGGACCCCCAAGCCAATAGGCCTATGTCTCATAT 98038 Query 116294 TAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTT 116353 | || |||| ||| || || ||| |||| ||| ||||| | || | ||| | Sbjct 98039 TTGAGTTTCTAGCTTCAGGAACAGGGTAATAATTGACATCAATAACTTTGTTCAAATTCT 98098 Query 116354 TGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGC-----GAGTCTC 116408 | || | |||||| | | || ||||||||| ||||| | | | | ||| Sbjct 98099 TCGTAATAACCTTAGCAACTTGATGAAGCTTGGGATAATCCATTGTTCTTTTTGCATCTT 98158 Query 116409 T-TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCT 116467 | ||||| ||| | || | ||| ||||| || | |||||| || | | ||||| Sbjct 98159 TATCATTAACAAATTTGTTCAAGGCAATTGAAGCTAAATTACAAACTGCGACTTCATCAG 98218 Query 116468 TATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCT 116527 | || ||||| | |||||| || |||||||| || | || || || || | || | Sbjct 98219 GAGAAGAGTACTGAACAATTTCAGTGCACAAATTAGAGCATTTGATAGTTCCAAGATTTT 98278 Query 116528 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCG 116587 ||| || ||| |||| || ||||| ||||| || || || || | || || || Sbjct 98279 GTTGGTTACTTTTTCTGTTGCAAGCATCTTTGTAAAGAATGTAGGGGTTTCCTGTTTCAA 98338 Query 116588 TTTG 116591 |||| Sbjct 98339 TTTG 98342 >seq76 Length=128862 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 115660 TGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG 115719 || |||||||||||||| ||| ||||| || ||||||| | | |||||| || Sbjct 12524 TGAGATTGATCGATGAATGCTCCACGATCAGCTGCCATATTTAAGATATCCTTTTGACTG 12583 Query 115720 ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG 115779 |||||||| || ||| |||| || | |||||| |||| ||| || || | || ||||| Sbjct 12584 ATTTCCCAGACTGTTTTGTAAAGTTCCTTAATTTCATTTGGAATTTCGGCAATCTTTTGA 12643 Query 115780 ATAGAGCCACCTGC 115793 ||||| |||||||| Sbjct 12644 ATAGACCCACCTGC 12657 >seq13 Length=696343 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 115637 TTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCA 115696 |||| | || || ||||| || |||||||||||||| ||| ||||| || |||| Sbjct 649480 TTTCTACAAATAGATTCATTGACTGAGATTGATCGATGAATGCTCCACGATCAGCTGCCA 649539 Query 115697 T-ATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCA 115755 | || ||| | ||| ||| ||||||||||||| ||| | || || | |||||| ||| Sbjct 649540 TAATTAAT-ATATCTTTCTGACTGATTTCCCACACTGTTTTATAAAGTTCCTTAATTTCA 649598 Query 115756 TCTGGGATATCCACGATATTTTGGATAGAGCCACCTGC 115793 | ||| || || | || ||||| ||||| |||||||| Sbjct 649599 TTTGGAATTTCGGCAATCTTTTGAATAGACCCACCTGC 649636 >seq108 Length=67188 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 115630 GTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCC 115689 ||||| |||| | |||||| ||||||||||| || || |||||| || ||| |||||| Sbjct 7149 GTTGGTTTTTCTACGAAGAGATTCATACTTTGAGACTGGTCGATGTAGGCTCCACGATCC 7090 Query 115690 GCCGCCATATCAATCACATC-CTTCATCTTGATTTCCCACACAGTTCTGTAGAGGTTCTT 115748 || |||||| | || | || ||| | | | ||| ||||||| |||| || | ||| Sbjct 7089 GCTGCCATACCCATTAATTCTCTTTGAC-TCAGTTCATACACAGTCTTGTAAAGTTCCTT 7031 Query 115749 AATATCATCTGGGATATCCACGATATTTTGGATAGAGCCA 115788 |||||| || || || |||||||||| || || ||| Sbjct 7030 AATATCCGAGGGAATTTCTTCGATATTTTGAATGGATCCA 6991 >seq2 Length=2086053 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 176608 TGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATC 176667 ||||||| | ||||||| | ||||| |||||||||||||||||| || ||||| | ||| Sbjct 276090 TGGCCAGTTGCAGTGGATGAAATTGATGATGAGACCCTTAATGTGGGATCCATCCTGATC 276149 Query 176668 CGCATCCGTCATAATCATGAGCCGACCATAGCGAAG 176703 ||| | ||||||||| | ||||| || ||||| Sbjct 276150 TTGATCGGCCATAATCATAATGCGACCGTACCGAAG 276185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503587976360