Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6 132 1e-25 seq32 118 2e-21 >seq6 Length=947499 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||||||| || | || | || || |||||||||| ||||||||| | | ||| Sbjct 441962 CGAAGTCTCAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGAAAGAGTA 442021 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || |||| ||||||||||| ||||| || | |||||||| ||| |||||| Sbjct 442022 CGTCCGTCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCCT 442081 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||| || ||| || || | ||||| | | ||| || ||||| Sbjct 442082 TCCTTGTCTTGAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCACTTCCAAA 442141 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||||||||| ||||||||||| Sbjct 442142 GTAATTGTCTTTCCGGTGAGAGTTTTGACAAAAATTTG 442179 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | || ||||| ||||||||||||| |||||||||| ||||| || || Sbjct 442195 TCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCC 442254 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | ||||||||||| ||||| || | || ||||| ||| ||||||||| Sbjct 442255 ATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCTTT 442314 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| || |||| |||||| | || || || ||||| || || Sbjct 442315 GTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGATGCCTCAACCTCCAAGGTAAT 442374 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || || Sbjct 442375 AGTTTTTCCAGTAAGGGTCTTGACGAAGATCTG 442407 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| ||||| | || || || ||||||||||||| |||||||||| ||||| || Sbjct 442421 AGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTC 442480 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| |||| ||||||||||| ||||| || | || ||||| ||| |||||||| Sbjct 442481 CCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCC 442540 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || ||||| || ||| |||| |||||| | | ||| || |||| ||| Sbjct 442541 TTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTG 442600 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || || || ||||| Sbjct 442601 ATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTG 442635 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| ||||| | || || || ||||||||||||| |||||||||| ||||| || Sbjct 442649 AGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTC 442708 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| |||| ||||||||||| ||||| || | || ||||| ||| |||||||| Sbjct 442709 CCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCC 442768 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || ||||| || ||| |||| |||||| | | ||| || |||| ||| Sbjct 442769 TTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTG 442828 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || | ||| || || || ||||| Sbjct 442829 ATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTG 442863 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||||||||| ||||||||||| || |||||||| || ||||| || |||||| Sbjct 442289 AAAGACTTATCTTTGCCGGAAAGCAATTAGAAGATGGGAGAACTTTAAGTGACTACAACA 442230 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 201024 |||| || ||||| |||||||| | || |||||| Sbjct 442229 TCCAAAAGGAGTCAACTCTTCATTTGGTCTTGAGA 442195 >seq32 Length=411647 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | ||| || || || || ||||||| ||||||||| | |||||| Sbjct 326282 CGAAGTCTCAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTA 326223 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||||||||| ||||| ||||| || || || || ||||||| Sbjct 326222 CGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATTCCT 326163 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| || ||| || | |||||| | | ||| || || | Sbjct 326162 TCCTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACTTCAAGA 326103 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||| || || ||||| || Sbjct 326102 GTAATTGTTTTCCCGGTAAGAGTCTTAACGAAAATCTG 326065 Score = 113 bits (124), Expect = 1e-19 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||| ||||||||||| ||||||||||| | |||||| |||| |||||| |||| Sbjct 326188 CTTATCTTTGCCGGAAAGCAATTGGAAGATGGGCGTACTTTGTCCGACTACAACATCCAA 326247 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| ||||| |||||| | |||||||||||||| Sbjct 326248 AAAGAATCTACCCTTCACTTGGTTTTGAGACTTCG 326282 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||| || || | ||| || || || || ||||||| ||||||||| | || || Sbjct 326055 TCTAAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGT 325996 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||||| || ||||| || ||||| | | || || || || |||||| Sbjct 325995 TCTTCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGGGAATTCC 325936 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| ||| ||| || | |||||| | | ||| || || | Sbjct 325935 TTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAACTTCAAG 325876 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || | ||| || |||||||| || Sbjct 325875 AGTAATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTG 325837 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| | | ||||| || ||||| || |||||||||||||| || || |||| |||||| Sbjct 325955 AAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAACA 326014 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 |||| ||||| ||||| |||||| | ||| | |||||| || Sbjct 326015 TCCAAAAAGAATCTACCCTTCACTTGGTTCTTAGACTTAGA 326055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178914485576557