Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 7e-12 >seq6 Length=947499 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||||| || ||||||||||| |||||||| || ||||| || |||| || Sbjct 441974 ACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGAAAGAGTACGTCCGTCCTCC 442033 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||||| ||||| || || | | |||||||| | || | | |||||||| Sbjct 442034 AATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGA 442093 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| | | | ||||| | |||||| |||| || || || || Sbjct 442094 ATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCACTTCCAAAGTAATTGTCTTT 442153 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || ||||| ||||| ||||||||| Sbjct 442154 CCGGTGAGAGTTTTGACAAAAATTTGCATT 442183 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| || ||| | | | || || | ||||| ||||| || Sbjct 442447 CTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAA 442506 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | || ||||| | || | | |||||||| |||||| |||| ||| Sbjct 442507 GATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGA-CGT 442565 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| | ||| || |||| ||||||||||| || || || || || | Sbjct 442566 TGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTGATGGTTTTTCCAGTAAGGGTCTTGA 442625 Query 46581 CAAAGATTTGCATT 46594 | |||||||||||| Sbjct 442626 CGAAGATTTGCATT 442639 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| || ||| | | | || || | ||||| ||||| || Sbjct 442675 CTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAA 442734 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | || ||||| | || | | |||||||| |||||| |||| ||| Sbjct 442735 GATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGA-CGT 442793 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| | ||| || |||| ||||||||||| || |||| || || | Sbjct 442794 TGTCGATGGTGTCGGAAGCTTCGACTTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTGA 442853 Query 46581 CAAAGATTTGCATT 46594 | |||||||||||| Sbjct 442854 CGAAGATTTGCATT 442867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235072158920