Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6 113 5e-20 seq32 104 2e-17 >seq6 Length=947499 Score = 113 bits (124), Expect = 5e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || || || || |||||||||||| | || ||||| || | Sbjct 442639 AATGCAAATCTTCGTCAAGACCCTTACTGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 442580 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | |||| | |||| || |||| ||||| || ||||| || | |||| Sbjct 442579 CGACACCATCGACAACG-TCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACC 442521 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| | || || | || || || || |||| || | | | || | | ||||||| Sbjct 442520 AACAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACA 442461 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||||||| | || || |||||||| || Sbjct 442460 ACATCCAAAAGGAGTCAACCCTTCATTTGGTCCT 442427 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || | || || |||||||||||| | || ||||| || | Sbjct 442867 AATGCAAATCTTCGTCAAGACTTTGACCGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 442808 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | |||| | |||| || |||| ||||| || ||||| || | |||| Sbjct 442807 CGACACCATCGACAACG-TCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACC 442749 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| | || || | || || || || |||| || | | | || | | ||||||| Sbjct 442748 AACAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACA 442689 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||||||| | || || |||||||| || Sbjct 442688 ACATCCAAAAGGAGTCAACCCTTCATTTGGTCCT 442655 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| ||||| || || || || || | || || || ||| | Sbjct 442183 AATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACAATTACTTTGGAAGTGGAAGCCTC 442124 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | || | ||||| | ||||| || ||||| || | ||||| Sbjct 442123 GGACACTATTGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCA 442064 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | || || | || || || || |||| |||| || || || |||||||| Sbjct 442063 GCAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGACGGACGTACTCTTTCAGACTACAA 442004 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||||||||||| | || |||||||||| ||| Sbjct 442003 CATCCAAAAGGAATCAACCTTGCATTTGGTTCTG 441970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || || ||||| || ||| | || || ||||| | Sbjct 442411 AATGCAGATCTTCGTCAAGACCCTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 442352 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || |||| |||||||| ||||| || | ||||| Sbjct 442351 TGACACCATCGATAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCA 442292 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | || || || || | || || | | | || | | |||||||| Sbjct 442291 ACAAAGACTTATCTTTGCCGGAAAGCAATTAGAAGATGGGAGAACTTTAAGTGACTACAA 442232 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || |||||||| || | ||| | || || Sbjct 442231 CATCCAAAAGGAGTCAACTCTTCATTTGGTCTTGAGATTGCGTGGAGG 442184 >seq32 Length=411647 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || || ||||| || || | || ||||| ||| | Sbjct 326061 AATGCAGATTTTCGTTAAGACTCTTACCGGGAAAACAATTACTCTTGAAGTCGAAGCCTC 326120 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| || |||| ||||| || ||||||||| | || | Sbjct 326121 TGACACCATTGACAACG-TCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATC 326179 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || || || | || || || || |||| || | ||| || | |||||||| Sbjct 326180 AACAACGTCTTATCTTTGCCGGAAAGCAATTGGAAGATGGGCGTACTTTGTCCGACTACA 326239 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||||||| ||| | || || || ||||| Sbjct 326240 ACATCCAAAAAGAATCTACCCTTCACTTGGT 326270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169855232640