Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq108 141 1e-28 seq76 140 4e-28 seq13 136 5e-27 >seq108 Length=67188 Score = 141 bits (156), Expect = 1e-28 Identities = 885/1398 (63%), Gaps = 65/1398 (5%) Strand=Plus/Plus Query 111627 ATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACATACGAC 111686 ||||| || || | || || || ||| ||||||| | ||| | | ||||| ||| || Sbjct 5507 ATGCGTGTTGCTGTTGGCATTCACAAGGAGGATATTGGTGCTGCTATTGAGACTTACAAC 5566 Query 111687 AAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACC 111745 |||||| | | ||| |||| || || || |||||||| || ||||||||||| Sbjct 5567 TTGATGTCT-GAGAAATGGTTCACTCATGCCACGCCAACCCTTTTTAACGCTGGTACTTG 5625 Query 111746 AAGACCCCAAATGTCCAGTTGTTTCCTTATTG-CAAACAAGGAGGATTCAATCAATGGCA 111804 | || ||| | ||| ||||| ||||||| | | || |||||||| |||| | Sbjct 5626 TATTCCTCAACTTTCCTCCTGTTT-CTTATTGACCATTGCTGATGATTCAATTGATGGAA 5684 Query 111805 TTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGC 111864 | ||| ||| | || |||||||| | ||||| || | ||||| || ||||| | Sbjct 5685 TCTACAAGACTTTATCTCAATGTGCCAAGATCTCTAAATCTGCTGGAGGAATCGGACTCA 5744 Query 111865 ACATCCATGATGTCAGAGCCAACAAGTCTCG-TATTAGAGGTACAAATGGTCAATCAGAT 111923 || |||| | |||||||||| | || || ||| | ||||| ||||| || || Sbjct 5745 ACGTCCACAAAATCAGAGCCAA-AGGTTCCGCTATCAATGGTACTAATGGAATCTCGAAT 5803 Query 111924 GGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGG 111983 || || |||||||||| | ||||| || || || ||||| |||||| || Sbjct 5804 GGACTTGTTCCAATGCTCCAAGTATTCAATAGTACCGCCAAGTATGTCGACCAAG-GAGG 5862 Query 111984 CGTCGCAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGA 112039 | ||| || || | || | ||||| || |||||||| || ||||||||||| Sbjct 5863 AAACAAAAGACCTGGTGCTTTTGCTATTTATCTAGAACCATGGCATGCTGATATCATGGA 5922 Query 112040 GTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAG---GAGGC---GCGGTGCCGCGATCT 112093 || || ||| || || || ||||| | || || ||| || || | Sbjct 5923 TTTTCTGGAG------CTTAAGAAAAATGATGGGACAGATGCCAATCGGGCACGAGACTT 5976 Query 112094 CTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTG 112153 || | || || |||||||| ||||| |||||||| |||| |||| ||| | || Sbjct 5977 GTTTTACGGGCTGTGGATTCCGGATCTTTTCATGAAAAGAGCCAAGGAAGGTGAAATGTG 6036 Query 112154 GTCTCTCTTTTGTCC-AGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTG 112212 |||| | | ||||| | || || || || | | ||| ||| ||||| || | Sbjct 6037 GTCTTTGATGTGTCCTAATGAATGC-CCTGGCTTAGCTGATTGTTGGGGAGAGGACTTCG 6095 Query 112213 AAGCCCTCTACACAAAGTACGA----GGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCT 112268 || | | || | ||||| || | || |||| | || | | || ||| Sbjct 6096 AAACTTTGTATGCCAAGTATGAAACTGAAAAGAAGTATCG---CTCCCA-AGTCAAGGCT 6151 Query 112269 GCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTT 112328 ||| | | ||| || | | | ||||| ||| ||| | || || || || Sbjct 6152 AGAGATATTTTGAAGAAGATCATTGAATGTCAAATGGAGCTTGGAATGCCTTACATCCTA 6211 Query 112329 TACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCC 112388 | |||||| || || ||| ||| || || ||| ||||| | || || ||| | ||| Sbjct 6212 TTCAAAGATGCTTGCAACAGAAAAAGCAACCAACAGAATCTTGGAACCATAAAGTGCTCC 6271 Query 112389 AACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTC 112448 || | || ||||||||| | ||| | ||||| | || || |||||| | Sbjct 6272 AATTTGTGCACAGAAATCGTACAATACTCTTCGCCCGATGAAATTGCCGTTTGTAACTTG 6331 Query 112449 GCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA-----GACA-AAGACATTTGATTAT 112502 || || || || | ||| | ||||| | ||| || | ||||| | ||||| Sbjct 6332 GCTTCTATTGCATTAAACAAATTTGTGGTTGAAGAAGGAGGAAAGAAGACGATAGATTAC 6391 Query 112503 GAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGA 112562 | ||||| ||| ||| | || | | |||| |||| | |||| || || || Sbjct 6392 AAGAAACTTCACAGTGTTTCTAAGGTTATTACAAGAAACTTGAACAAGGTCATCGACGTC 6451 Query 112563 AATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 112619 |||| ||||| || ||| ||| | || || ||||||||||| | || ||||| Sbjct 6452 AATTACTACCCAGTCCCTGA---AGCTAGAAACTCAAATATGAGACATAGGCCTATTGGC 6508 Query 112620 CTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGA 112678 | || |||||||| | || |||| ||||| | ||| | || |||| ||| || Sbjct 6509 TTGGGGGTCCAAGGATTAGCTGATGCTTTCATGTTGTTGAGACTAC-CATTCACTTCTGA 6567 Query 112679 CGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGC 112738 | ||||| || |||| || |||||||| || || || | ||| | || || Sbjct 6568 TGCTGCGAAAGATGTCAACAAAAAGATCTTTGAGACTATTTACCATGGTGCTTTGGAAGC 6627 Query 112739 GAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 112798 || || | || || ||||| || ||| ||| | || || || || | ||| Sbjct 6628 TTCTTGTGAACTAGCTGAAAAAGATGGGCCCTATTCAACTTACGAAGGATCACCGGTTTC 6687 Query 112799 ACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC--TACGACTGG 112856 | | || || | |||| ||||||| |||| || | || || || | |||||| Sbjct 6688 AAAGGGAGTTTTGCAATACGATATGT-GGAATGTCACTCC-GTCTGAACTGTGGGACTGG 6745 Query 112857 GACGCTCTCAAGGAA-------CGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGAT 112909 | || ||||||||| | | || |||| | | ||| | | ||| | Sbjct 6746 GCTGCACTCAAGGAAAAGATTGCTAAACATGGAGTAAGAAATTC--ACTACTCT-----T 6798 Query 112910 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 112969 || |||||||| || ||||| || || ||||| ||||| || || ||| || ||||||| Sbjct 6799 AGCTCCAATGCCGACCGCCTCGACTGCTCAAATTTTGGGAAACAACGAAAGCATTGAACC 6858 Query 112970 CTACACGACGAACATCTA 112987 ||||| |||| || || Sbjct 6859 ATACACTTCGAATATGTA 6876 >seq76 Length=128862 Score = 140 bits (154), Expect = 4e-28 Identities = 599/931 (64%), Gaps = 28/931 (3%) Strand=Plus/Minus Query 112332 AAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAAC 112391 || || ||||| ||| ||| || |||||| | ||| | || || || | |||||| Sbjct 13428 AAGGATGCCTGCAACAGAAAAAGCAATCAACAAAATCTTGGAACTATTAAATGCTCCAAC 13369 Query 112392 CTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCA 112451 ||||| || ||||| | ||| || || |||| ||||| ||||| | ||| Sbjct 13368 CTCTGCACTGAAATTGTTCAATACTCATCACCCGAGGAGATTGCTGTTTGTAATTTGGCA 13309 Query 112452 TCAATCGCTCTCCCCAAGT-----AT-GTGGATCCAGAGACAAAGACATTTGATTATGAA 112505 ||||| || | ||| | || || || || |||| || |||||||| || | Sbjct 13308 TCAATTGCCTTAAACAAATTCGTTATAGTTGACGGCGATACAAGGAAATTTGATTTTGCA 13249 Query 112506 AAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAAT 112565 ||||| || ||||| | ||| ||| || | |||| | || | |||||||||| || Sbjct 13248 AAACTTCATGAAGTAGCCAAAGTTGTAACTAGAAACTTGAATAAAGTTATTGATGTCAAC 13189 Query 112566 TTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGT 112625 | |||||| || || | || || || |||| |||| | || |||||| | ||| Sbjct 13188 TATTACCCGGTCCCACAAGCAAGAAATTCAAACATGAAACACAGACCTATTGGTTTGGGT 13129 Query 112626 GTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCG--CCACGCATTTGATTCCGACGAAG 112683 |||||||| | ||||| | ||||| ||| | | |||||| ||| ||| | Sbjct 13128 GTCCAAGGATTAGCGGACGCTTTCAT--GTTGATGAAATATCCATTTGCTTCTTCCGATG 13071 Query 112684 CGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTT 112743 | ||||| | || |||||||| ||||| ||||| | | | || || || Sbjct 13070 CAAAGGATTTAAACAAAAAAATATTTGAAACAATCTATCATGGTTCGTTGGAAGCATCTT 13011 Query 112744 CGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAG 112803 || ||||| || || || ||||| ||||| | ||||| || | ||| ||| Sbjct 13010 GTGAATTGGCTGAAAGCGACGGACCATACTCAACCTACGCTGGTTCCCCTGTTTCTAAAG 12951 Query 112804 GGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA--AGCTTCACTACGACTGGGACGC 112861 | | || |||| ||| |||| |||| || | |||| || || | || |||| Sbjct 12950 GAATTCTGCAATATGACATGT-GGAATGTTACACCATCAG-ATCTTTGGGATTGGGGTCG 12893 Query 112862 TCTCAAGGAACGCA-TCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCACCAAT 112918 || |||||| | | | | | | ||| || | | | ||||| | | ||||| || Sbjct 12892 GCTTAAGGAAAGAATTGCATTACATGGG-GTTAG--AAATTCTTTGCTCCTTGCACCTAT 12836 Query 112919 GCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGAC 112978 ||||||||| || ||||| ||||| | || || |||||| | |||| || || || | Sbjct 12835 GCCAACAGCTTCAACCGCTCAAATTCTTGGAAACAATGAAAGTATTGAGCCATATACATC 12776 Query 112979 GAACATCTAT--CTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTC 113036 || || ||| | | | ||| | || || ||| |||||||| ||| | Sbjct 12775 TAATATGTATTCACGTCGTGTAACCT--CTGGCGACTTTCAAATTGTCAATTCACATTTA 12718 Query 113037 GTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC--TCATGGTGA 113094 | ||||||| | || | | ||| | | | | || ||| ||| | Sbjct 12717 CTTAATGACCTTGTCAATCTTAATTTATGGACTGACAAAGTAAA--ATCAGAGATGATAG 12660 Query 113095 AAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACC 113154 ||| ||||| || |||||||| |||| || |||||| ||||||||||| | | ||| Sbjct 12659 CAGCAGGTGGGTCTATTCAAAAGATTGCCGAAATTCCAAATGAAATTAAGGAACTTTACA 12600 Query 113155 GCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCT 113214 ||||| |||||||||| |||||| || | | ||||| || |||||||| | Sbjct 12599 AAACAGTCTGGGAAATCAGTCAAAAGGATATCTTAAATATGGCAGCTGATCGTGGAGCAT 12540 Query 113215 TCATTGATCAAAGTCAAAGTATGAATCTATT 113245 |||| |||||| ||| ||||||||||| Sbjct 12539 TCATCGATCAATCTCAGTCAATGAATCTATT 12509 >seq13 Length=696343 Score = 136 bits (150), Expect = 5e-27 Identities = 650/1013 (64%), Gaps = 30/1013 (3%) Strand=Plus/Minus Query 112332 AAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAAC 112391 || || ||||| ||| ||| || |||||| | ||| | || || || | |||||| Sbjct 650407 AAGGATGCCTGCAACAGAAAAAGCAATCAACAAAATCTTGGAACTATTAAATGCTCCAAC 650348 Query 112392 CTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCA 112451 ||||| || ||||| | ||| || || |||| ||||| ||||| | ||| Sbjct 650347 CTCTGCACTGAAATTGTTCAATACTCATCACCCGAGGAGATTGCTGTTTGTAATTTGGCA 650288 Query 112452 TCAATCGCTCTCCCCAAGTATGTGGA--TCCA----GAGACAAAGACATTTGATTATGAA 112505 ||||| || | ||| | || | | | || |||| || |||||||| || | Sbjct 650287 TCAATTGCCTTAAACAAATTCGTTGCAGTTGACGGCGATACAAGGAAATTTGATTTTGTA 650228 Query 112506 AAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAAT 112565 ||||| || ||||| | ||| ||| || | |||| | || | |||||||||| || Sbjct 650227 AAACTTCATGAAGTAGCCAAAGTTGTAACTAGAAACTTGAATAAAGTTATTGATGTCAAC 650168 Query 112566 TTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGT 112625 | |||||| || || | || || || |||| |||| | || |||||| | ||| Sbjct 650167 TATTACCCGGTCCCACAAGCAAGAAATTCAAACATGAAACACAGACCTATTGGTTTGGGT 650108 Query 112626 GTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG--CATTTGATTCCGACGAAG 112683 |||||||| | ||||| | ||||| ||| | | |||||| ||| || | Sbjct 650107 GTCCAAGGATTAGCGGACGCTTTCATG--TTGATGAAATATCCATTTGCTTCTTCTGATG 650050 Query 112684 CGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTT 112743 | ||||| | || |||||||||||||| ||||| | | | | || || || Sbjct 650049 CAAAGGATTTAAACAAAAAAATATTTGAGACAATCTATCATGGCTCGTTGGAAGCATCTT 649990 Query 112744 CGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAG 112803 || ||||| || || || ||||| ||||| | ||||| || | ||| ||| Sbjct 649989 GTGAATTGGCCGAAAGCGACGGACCATACTCAACCTACGCTGGTTCCCCTGTTTCTAAAG 649930 Query 112804 GGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAA-GCTTCACTACGACTGGGACGCT 112862 | | || |||| ||| |||||| || || | |||| | || | ||||||| Sbjct 649929 GAATTCTGCAATATGACATGTGG-AATGTTACACCATCGGATCTTTGGGACTGGGGTCGG 649871 Query 112863 CTCAAGGAACGCATCA-AGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCACCAATG 112919 || |||||| | || | | | ||| || | || ||||| | | ||||| ||| Sbjct 649870 CTTAAGGAAAGAATTGCATTACATGGGG-TTAGAAAT--TCTTTGCTCCTTGCACCTATG 649814 Query 112920 CCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACG 112979 |||||||| || ||||| ||||| | || || |||||| | |||| || || || | Sbjct 649813 CCAACAGCTTCAACCGCTCAAATTCTTGGAAACAATGAAAGTATTGAGCCATATACATCT 649754 Query 112980 AACATCTATCTGAGAAGA--ACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCG 113037 || || ||| | | | | || || || ||| |||||||| ||| | Sbjct 649753 AATATGTATTCACGTCGTGTAACTTCT--GGCGACTTTCAAATTGTCAATTCACATTTAC 649696 Query 113038 TGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA--TGGTGAA 113095 | ||||||| | || | | ||| | | | | || ||| | || | Sbjct 649695 TTAATGACCTTGTCAATCTTAATTTATGGACTGACAAAGTAAA--ATCAGAGATGATAGC 649638 Query 113096 AGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCG 113155 ||| ||||| || |||||||| |||| || |||||| ||||||||||| | | || Sbjct 649637 AGCAGGTGGGTCTATTCAAAAGATTGCCGAAATTCCAAATGAAATTAAGGAACTTTATAA 649578 Query 113156 CACAGTTTGGGAAATCAAGATGAAGGATGTCATTGAC-ATGGCCGCAGATCGTGGTCGCT 113214 ||||| |||||||||| ||| ||| | ||| | ||||| || |||||||| | Sbjct 649577 AACAGTGTGGGAAATCAGTCAGAAAGATAT-ATTAATTATGGCAGCTGATCGTGGAGCAT 649519 Query 113215 TCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCT 113274 |||| |||||| ||| ||||||||||| | |||| || || | ||| | ||| Sbjct 649518 TCATCGATCAATCTCAGTCAATGAATCTATTTGTAGAAAAACCTTCGCT-TCCTAATTCT 649460 Query 113275 -CTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTA 113326 | || ||| | | || |||||||| ||| | ||||| || |||| || Sbjct 649459 ACATCAATGTTCTTTTATAGTTGGAAACTAGGTTTAAAAACTGGAGTGTACTA 649407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738745379120