Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq76 141 1e-28 seq13 132 6e-26 >seq76 Length=128862 Score = 141 bits (156), Expect = 1e-28 Identities = 439/668 (66%), Gaps = 16/668 (2%) Strand=Plus/Plus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||| || || | || || || |||| | |||||| || || | ||||| ||||| || Sbjct 12766 ATACATATTAGATGTATATGGCTCAATACTTTCATTGTTTCCAAGAATTTGAGCGGTTGA 12825 Query 105994 GGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGT 106051 ||||||||||| ||||| | | ||||| | | | || || | | || | | Sbjct 12826 AGCTGTTGGCATAGGTGCAAGGAGCAAAGAATTT--CTAACCCCATGTAATGCAATTCTT 12883 Query 106052 TCCTTGAGAACATCCCAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATATCAAATT 106109 ||||| || | |||| || | || || |||| | || |||| |||| ||| ||| Sbjct 12884 TCCTTAAGCCGACCCCAATCCCAAA-GATCTGATGGTGTAACATTCC-ACATGTCATATT 12941 Query 106110 GAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAG 106169 | || | |||| || || ||||| | | || || | || | | ||||| Sbjct 12942 GCAGAATTCCTTTAGAAACAGGGGAACCAGCGTAGGTTGAGTATGGTCCGTCGCTTTCAG 13001 Query 106170 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 106229 |||||||||| || |||| || | ||||| || |||||||| || || | Sbjct 13002 CCAATTCACAAGATGCTTCCAACGAACCATGATAGATTGTTTCAAATATTTTTTTGTTTA 13061 Query 106230 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 106289 ||||| || || ||| |||||| || ||| || || | ||||| | | Sbjct 13062 AATCCTTTGCATCGGAAGAAGCAAATGGATATTTCATCAACATGAAAGCGTCCGCTAATC 13121 Query 106290 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC-AGTCTCAACG 106348 |||| |||||||||||||||||||||||| ||| || || |||| || || | || Sbjct 13122 CTTGGACACCCAAACCAATAGGTCTGTGTTTCATGTTTGAATTTCTTGCTTGTGGGACCG 13181 Query 106349 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 106408 || ||| | || ||||| ||| || | ||| | || |||| || | | |||| Sbjct 13182 GG-TAATAGTTGACATCAATAACTTTATTCAAGTTTCTAGTTACAACTTTGGCTACTTCA 13240 Query 106409 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGAC-AT----ACTTTG-GAAGG 106462 ||||||||| || ||||||| | | || || | | || || | |||| | | Sbjct 13241 TGAAGTTTTGCAAAATCAAATTTCCTTGTATCGCCGTCAACTATAACGAATTTGTTTAAG 13300 Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || |||||||||||||| |||||||| |||| || || ||| | | |||||| Sbjct 13301 GCAATTGATGCCAAATTACAAACAGCAATCTCCTCGGGTGATGAGTATTGAACAATTTCA 13360 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || || | |||||| | ||||| || || | ||| | ||| || || ||| ||||||| Sbjct 13361 GTGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCTTTTTCTGTTGCAG 13420 Query 106583 GCATCCTT 106590 |||||||| Sbjct 13421 GCATCCTT 13428 >seq13 Length=696343 Score = 132 bits (146), Expect = 6e-26 Identities = 436/668 (65%), Gaps = 16/668 (2%) Strand=Plus/Plus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||| || || | || || || |||| | |||||| || || | ||||| ||||| || Sbjct 649745 ATACATATTAGATGTATATGGCTCAATACTTTCATTGTTTCCAAGAATTTGAGCGGTTGA 649804 Query 105994 GGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGT 106051 ||||||||||| ||||| | | ||||| | | | || || | | || | | Sbjct 649805 AGCTGTTGGCATAGGTGCAAGGAGCAAAGAATTT--CTAACCCCATGTAATGCAATTCTT 649862 Query 106052 TCCTTGAGAACATCCCAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATATCAAATT 106109 ||||| || | ||||||| | || | |||| | || |||| |||| ||| ||| Sbjct 649863 TCCTTAAGCCGACCCCAGTCCCAAA-GATCCGATGGTGTAACATTCC-ACATGTCATATT 649920 Query 106110 GAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAG 106169 | || | |||| || || ||||| | | || || | || | | ||| | Sbjct 649921 GCAGAATTCCTTTAGAAACAGGGGAACCAGCGTAGGTTGAGTATGGTCCGTCGCTTTCGG 649980 Query 106170 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 106229 |||||||||| || |||| || | ||||| || || ||||| || || | Sbjct 649981 CCAATTCACAAGATGCTTCCAACGAGCCATGATAGATTGTCTCAAATATTTTTTTGTTTA 650040 Query 106230 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 106289 ||||| || ||| ||| |||||| || ||| || || | ||||| | | Sbjct 650041 AATCCTTTGCATCAGAAGAAGCAAATGGATATTTCATCAACATGAAAGCGTCCGCTAATC 650100 Query 106290 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC-AGTCTCAACG 106348 |||| |||||||||||||||||||||||| ||| || || |||| || || | || Sbjct 650101 CTTGGACACCCAAACCAATAGGTCTGTGTTTCATGTTTGAATTTCTTGCTTGTGGGACCG 650160 Query 106349 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 106408 || ||| | || ||||| ||| || | ||| | || |||| || | | |||| Sbjct 650161 GG-TAATAGTTGACATCAATAACTTTATTCAAGTTTCTAGTTACAACTTTGGCTACTTCA 650219 Query 106409 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTC----TTCATTG--ACATACTTTGGAAGG 106462 ||||||||| || ||||||| | | || || | | || || | || | | Sbjct 650220 TGAAGTTTTACAAAATCAAATTTCCTTGTATCGCCGTCAACTGCAACGAATTTGTTTAAG 650279 Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || |||||||||||||| |||||||| |||| || || ||| | | |||||| Sbjct 650280 GCAATTGATGCCAAATTACAAACAGCAATCTCCTCGGGTGATGAGTATTGAACAATTTCA 650339 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || || | |||||| | ||||| || || | ||| | ||| || || ||| ||||||| Sbjct 650340 GTGCAGAGGTTGGAGCATTTAATAGTTCCAAGATTTTGTTGATTGCTTTTTCTGTTGCAG 650399 Query 106583 GCATCCTT 106590 |||||||| Sbjct 650400 GCATCCTT 650407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977326488040