Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq98 87.8 2e-12 >seq98 Length=84475 Score = 87.8 bits (96), Expect = 2e-12 Identities = 274/417 (66%), Gaps = 12/417 (3%) Strand=Plus/Plus Query 159265 TGGTTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAG 159324 ||| | ||| | || || || | |||| | | ||| | ||||| ||| ||| | | Sbjct 69251 TGGCTTTGTCAGATTACTGGTTATGATAATTTCTCACTCCAACCAAACAGTGGAGCTAAT 69310 Query 159325 GGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAG-ATGATAA 159383 || || ||||| || || | ||||| ||| || | ||||| | | | | || | Sbjct 69311 GGAGAATATGCTGGTATGCTGGCAATTAAAGGGTATC-TCAAGTCTATTGGGCAAGAACA 69369 Query 159384 AAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGC---AGT 159440 ||||||| | |||||||| || ||||| ||||||||||| ||||| || || | | Sbjct 69370 AAGAAATATTTGTTTGATTCCCTCATCAGCTCATGGAACTAACCCTGCTTCTGCGCAAAT 69429 Query 159441 GATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAA 159500 | || | ||| ||||| || | | || | |||| || || || | || Sbjct 69430 G-TGTAACTTCCGAA--TTGTACCCGTTGACTCAGACAAACATGGAAATATCAACTTTAA 69486 Query 159501 AGATCTAGAGAAGAAAGCAATCATGAATACATT--TGAACTGTCATGTATTATGATTACA 159558 ||||||| ||||| | | |||| | |||| || | ||||||| ||||| Sbjct 69487 AGATCTATGCGTTAAAGC--TGAAAAATATAAGAATGAATTGGGAGCTATTATGGTTACA 69544 Query 159559 TATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCAT 159618 || ||||| || |||||||| |||||| ||| ||||| | | || | || ||| Sbjct 69545 TACCCATCAACGCATGGTGTTTTTGAATCAACCATCATGGATGTTTGCGCCAAGGTACAT 69604 Query 159619 GAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTA 159675 || | || || || || ||||| |||||||||||| | ||||| ||| | || ||| Sbjct 69605 GAATACGGAGGACAAGTTTATCTAGATGGTGCAAATTTGAATGCTCAGATTGGACTA 69661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588047737848560