Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq32 178 3e-39 seq6 178 3e-39 seq39 127 5e-24 seq2 102 2e-16 >seq32 Length=411647 Score = 178 bits (196), Expect = 3e-39 Identities = 173/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | ||| | |||||| || || |||||||| || ||||| |||| | || Sbjct 326055 TCTAAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGT 325996 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || || ||||| | || |||||| ||||| ||||| || Sbjct 325995 TCTTCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGGGAATTCC 325936 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || ||||||||| ||||||||||| ||| ||| |||||||| Sbjct 325935 TTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAACTTCAAG 325876 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| || |||||||||||||| || || || | |||||| Sbjct 325875 AGTAATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCATT 325833 Score = 174 bits (192), Expect = 3e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||||||| | |||||| || || |||||||| || ||||| |||| | ||| | | Sbjct 326279 AGTCTCAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGC 326220 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | ||||| || || |||||||| |||||||| ||||| ||||| ||||| Sbjct 326219 CCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCC 326160 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || || |||||||| ||||||||||| || ||| |||||||| ||| Sbjct 326159 TTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACTTCAAGAGTA 326100 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||| || ||||| | |||||| Sbjct 326099 ATTGTTTTCCCGGTAAGAGTCTTAACGAAAATCTGCATT 326061 Score = 118 bits (130), Expect = 2e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||||||| || || | || |||||| ||||||||||| ||||| |||||||| ||||| Sbjct 325705 CTTACCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTT 325646 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || ||||| || ||| ||| || ||||| || | ||||| || || Sbjct 325645 GGCCTTGACATTATCGATGGTATCAGAAGCTTCAACCTCAAGAGTGATGGTCTTGCCGGT 325586 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | |||||||||||| | |||||| Sbjct 325585 GAGAGTTTTTACGAAAATCTGCATT 325561 >seq6 Length=947499 Score = 178 bits (196), Expect = 3e-39 Identities = 173/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | || | ||||| || ||||| ||||| || ||||| || | ||| Sbjct 442645 TCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGT 442704 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||||||||| || | ||||| || || |||||||||| ||||||||||||||| || || Sbjct 442705 TCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCC 442764 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || |||||||| || |||||||| ||| ||| ||||| || Sbjct 442765 TTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAG 442824 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| | || ||||| |||||||| || ||||| | ||||||| Sbjct 442825 GGTGATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCATT 442867 Score = 178 bits (196), Expect = 3e-39 Identities = 173/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | ||| | ||| ||||| || ||||| || |||||||| |||| || || Sbjct 442873 TCTGAGTCTAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATATTGTAGTCGGAGAGGGT 442932 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | ||||| || || |||||||||| |||||||||||||||||| || Sbjct 442933 ACGGCCATCTTCTAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGGTCTGGAGGAATTCC 442992 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||||||||| |||||| || || |||||||| || || || || | Sbjct 442993 TTCCTTGTCTTGAATTTTGGCCTTGACATTATCGATGGTGTCGGATGCCTCAACCTCCAA 443052 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| || ||||| || | ||||| ||||| | ||||||| Sbjct 443053 GGTAATAGTTTTTCCAGTAAGTGTTTTAACGAAAATTTGCATT 443095 Score = 163 bits (180), Expect = 6e-35 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | || | ||||| || ||||| ||||| || ||||| || | ||| Sbjct 442417 TCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGT 442476 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||||||||| || | ||||| || || |||||||||| ||||||||||||||| || || Sbjct 442477 TCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCC 442536 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| |||||||| || || |||||||| || |||||||| ||| ||| ||||| || Sbjct 442537 TTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGACTTCCAG 442596 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| | || ||||| || | || || ||||| | ||||||| Sbjct 442597 GGTGATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCATT 442639 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||| ||| | || | || || || ||||| || ||||| || | |||||| | Sbjct 441965 AGTCTCAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGAAAGAGTACGT 442024 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || || | ||||| || || |||||||||| ||| ||||||||||| || ||||| Sbjct 442025 CCGTCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCCTTCC 442084 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| |||||| || ||||| |||||||| ||||||||| | ||| Sbjct 442085 TTGTCTTGAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCACTTCCAAAGTA 442144 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||||||| || | |||||| || || | ||||||| Sbjct 442145 ATTGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATT 442183 Score = 158 bits (174), Expect = 3e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 |||||| || | |||||||| ||||| ||||| || ||||| || | ||||||||| Sbjct 442195 TCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCC 442254 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| | ||||| || || |||||||||| ||||||||||||||| || |||||||| Sbjct 442255 ATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCTTT 442314 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 |||||| || || |||||| || || |||||||| || || || || | ||||| Sbjct 442315 GTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGATGCCTCAACCTCCAAGGTAAT 442374 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || | || || ||||| | |||||| Sbjct 442375 AGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCATT 442411 Score = 116 bits (128), Expect = 8e-21 Identities = 117/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || || || |||| ||||||||||| ||||| ||||| ||||||||||| || Sbjct 443228 CTTACCGGCAAAAATGAGTCTCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGAATCTT 443287 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||| || || || |||||| ||| || || | ||| | ||||||||||| Sbjct 443288 CGCTTTGACGTTGTCGATCGTATCCGAAGCTTCAACCTCCAAGGTGATTGTCTTTCCTGT 443347 Query 195117 CAAAGTTTTTACGAACACTTGCATTTATGGT 195147 | |||||||| || | ||||| ||||||| Sbjct 443348 TAGCGTTTTTACAAAAATTTGCA-TTATGGT 443377 >seq39 Length=348097 Score = 127 bits (140), Expect = 5e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| | || |||||| ||||||||||| ||||| |||||||||||||| Sbjct 169958 CTTACCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATTTT 169899 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || ||||| || ||||| ||| || || |||||||||| ||||| || || Sbjct 169898 AGCCTTTACATTCTCGATAGTGTCTGAAGCCTCTACCTCAAGGGTAATGGTCTTACCAGT 169839 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| || || ||||| | ||||||| Sbjct 169838 CAATGTCTTGACGAAGATTTGCATT 169814 >seq2 Length=2086053 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || ||||| | || |||||| ||||||||||| ||||| ||||||||||| || Sbjct 1233670 CTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATCTT 1233611 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || || |||||||| || || || || ||||||| || || || || Sbjct 1233610 GGCTTTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATTGTTTTACCGGT 1233551 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || |||||||| | |||||| Sbjct 1233550 AAGGGTCTTTACGAAAATTTGCAT 1233527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109474904625257