Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7 215 4e-50 seq14 185 7e-41 seq32 118 9e-21 seq6 116 3e-20 seq67 100 2e-15 seq42 96.9 3e-14 seq2 91.5 1e-12 >seq7 Length=777966 Score = 215 bits (238), Expect = 4e-50 Identities = 358/509 (70%), Gaps = 15/509 (3%) Strand=Plus/Minus Query 550031 GGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACT 550090 ||||| | ||| |||| ||||||||||| |||||||| |||||||| |||||||||||| Sbjct 253007 GGTGTCTTCCAACATGGAAAAGTTGAAATCATTGCCAACGATCAAGGAAACAGAACTACT 252948 Query 550091 CCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA 550150 || ||||| || |||| || || || ||| ||| | |||||||| || || | ||| Sbjct 252947 CCTTCTTACGTAGCTTTTACTGACACAGAAAGATTACTCGGTGATGCTGCCAAGAACCAA 252888 Query 550151 GCCACTGGTAATCCTACCAATACTA--TTTTTGATGCTAAACGTTTAATTGGAAGAAGTT 550208 | | | || || ||| ||| | ||||| || || | |||||||| |||| | Sbjct 252887 GTCGCCATGAACCCA--CAAAACTCAGTCTTTGACGCCAAGAGATTAATTGGCAGAAAAT 252830 Query 550209 TTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTT 550268 | | ||| | || || | || |||||||||||||||||| | | | || Sbjct 252829 TCGACGATCGTGCCGTCCAAGATGACATGAAGCATTGGCCTTTCAA----GGTCCTGGAC 252774 Query 550269 C-TGGAA---AACCTTATATTGAAG-CTACTCATGAAGGATCTGTTAAACAATTTTCACC 550323 | ||||| |||| || |||| | | | | |||| ||| ||||| || Sbjct 252773 CGTGGAACCAAACCAATGATCGAAGTCGAATT-TAAAGGGGAGAAAAAAGAATTTAGTCC 252715 Query 550324 AGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGG 550383 ||| ||||||| || |||||| | || ||||||||| |||| ||| |||| | || Sbjct 252714 CGAAGAAATTTCCTCCATGGTTCTTATCAAAATGAAAGAAACGGCCGAAGCTTACTTAGG 252655 Query 550384 TCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCA 550443 ||| || | || || || || || || ||||| || || ||||| |||||| | || Sbjct 252654 GCAAACTGTCAAAGACGCTGTCATCACCGTCCCAGCCTACTTCAATGATTCACAAAGACA 252595 Query 550444 AGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 ||| ||||||||||| ||| |||||| || | |||||| | | |||||||||||||| Sbjct 252594 AGCCACTAAAGATGCGGGAGCTATTGCCGGTTTGAATGTTTTGAGAATTATCAATGAACC 252535 Query 550504 TACTGCTGCTGCACTTGCATATGGACTTG 550532 ||| |||||||| |||| ||||| |||| Sbjct 252534 TACAGCTGCTGCTATTGCTTATGG-CTTG 252507 Score = 161 bits (178), Expect = 8e-34 Identities = 326/479 (68%), Gaps = 6/479 (1%) Strand=Plus/Minus Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966 || ||||| || || ||||||||||| || | | || || ||||||| | |||| Sbjct 252229 CTTAGAACGGCCTGTGAAAGAGCCAAGAGAACGTTGTCTTCCTCTACTCAAGCTTCTATC 252170 Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026 ||| |||| || || ||||| || || || | | || |||| | || ||| ||| Sbjct 252169 GAAATAGACTCTTTGTTTGATGGCATCGACTTCTACACCAATATTACCAGAGCCCGATTC 252110 Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGA 552086 ||||| | ||| |||||||||| |||| ||||| || || || ||| | | || ||| Sbjct 252109 GAAGAACTATGTGCTGATCTCTTCAGAAGCACAATGGATCCCGTCGAAAAGGCATTGAGA 252050 Query 552087 GATTCAAAGATTGATAAAT-CCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAG 552145 ||| | || | || ||| ||||| || |||||||||| | ||||||||||||||||| Sbjct 252049 GATGCTAAAAAGGACAAAGGCCAAATTA-ATGAAATTGTTTTGGTTGGTGGATCTACAAG 251991 Query 552146 AATTCCTAAAATTCGCGAAATGTTAAGTTC--TTATTTCAATGGTAAAAAATTAAATGAA 552203 |||||| ||| | | || | || || | || ||| ||| | ||||| || Sbjct 251990 AATTCCCAAAGTCCAAAAACTCTT--GTCCGATTTATTCTCTGGCCGTGACTTAAACAAA 251933 Query 552204 AGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCT 552263 | |||||||| || || || |||||||| || || | |||||||||||| | ||| Sbjct 251932 TCCATCAATCCAGACGAAGCCGTCGCCTATGGAGCTGCCGTCCAAGCAGCTATTTTATCT 251873 Query 552264 GGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTT 552323 || | | |||| | ||| | | | ||| | ||||| | || || |||||| Sbjct 251872 GGCGACAAGTCTGAAGCTGTCCAAGACTTACTTCTTCTCGATGTCGCCCCACTTTCTCTT 251813 Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 || | ||||| | || || || |||||| | | ||| | | || ||||| ||||| Sbjct 251812 GGAATCGAAACGGCAGGTGGAATCATGACTGCTTTGATCAAACGTAACACTACGATTCC 251754 >seq14 Length=692332 Score = 185 bits (204), Expect = 7e-41 Identities = 391/573 (68%), Gaps = 14/573 (2%) Strand=Plus/Plus Query 550018 ATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGG 550077 ||||| || | | ||||||| ||| |||| || ||||||||||| ||||| || ||||| Sbjct 339911 ATATACTTTT-TAGGTGTTTTCCAACATGGAAAGGTTGAAATTATCGCCAACGACCAAGG 339969 Query 550078 TAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGC 550137 ||||||||||| |||||||| || |||| || || ||||||| ||| | || ||||| Sbjct 339970 AAACAGAACTACCCCATCTTACGTCGCTTTTACTGACACTGAACGTTTGTTAGGAGATGC 340029 Query 550138 AGCAAAATATCAAGCCACTGGTAATCCTACCAATACT--ATTTTTGATGCTAAACGTTTA 550195 || || | |||| | | || || ||| ||| | ||||| || || | | Sbjct 340030 TGCCAAGAACCAAGTCGCCATGAACCC--ACAAAACTCAGTCTTTGACGCCAAGAGACTT 340087 Query 550196 ATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAA 550255 || || |||| || | || | | || || | || ||||| || ||||| ||| | Sbjct 340088 ATCGGCAGAAAATTCGACGAAAAGGCCGTGCAAGATGACATGAAACACTGGCCATTCAAG 340147 Query 550256 ATTGT-TAA--TGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAA-GGATCTGTTAA 550311 |||| | | | |||||| | | || | || | | | || ||| ||| Sbjct 340148 GTTGTCTCAGCCGAAGGAGGAAAATGTAAGATCG-AGATTCAATTCAAGGGAGAAACTAA 340206 Query 550312 ACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAG 550371 |||||| | |||||| || ||||| ||| | || | |||||||| |||| ||| Sbjct 340207 ACAATTCACCCCAGAAGAATGCTCATCCATGATCTTGACCAAAATGAAGGAAACCGCCGA 340266 Query 550372 TGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGA 550431 |||| | | || ||| ||||| || || || | ||||| ||||| || || || || Sbjct 340267 AGCTTATTTGGGACAAACCGTTACTGACGCTGTCGTCACTGTTCCAGCTTACTTCAACGA 340326 Query 550432 CTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTAT 550491 ||| ||| | |||||||| || ||||| ||| || |||||||| ||||||||| | || Sbjct 340327 CTCCCAAAGACAAGCTACCAAGGATGCCGGAGCCATCGCTGGACTCAATGTTCTTAGAAT 340386 Query 550492 TATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA--CATAATGATCAA 550549 |||||| || || |||||||| || | || ||||| | || ||| | | || | Sbjct 340387 TATCAACGAGCCAACTGCTGCCGCCATCGCTTATGGTTTGGACAAAGCCGCCAAGAGTGA 340446 Query 550550 GAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582 ||| || || |||||||| |||| |||||| Sbjct 340447 GAA--GAACGTCCTCATCTTCGATTTAGGAGGT 340477 >seq32 Length=411647 Score = 118 bits (130), Expect = 9e-21 Identities = 154/209 (74%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| ||||||||| |||||| || ||||| || | | ||| | |||||| | Sbjct 326268 CAAG-TGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGCCCATCTTCCA 326210 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 ||| ||||||||||| ||||| | ||| ||||| || ||||||||||| || ||||| | Sbjct 326209 ATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGGA 326150 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTA 563445 | || ||| || ||||| || |||| | | | | ||| ||||||| ||||| Sbjct 326149 TCTTGGCTTTGACGTTGTCAATGGTGTCAGAG-GCTTCGACTTCAAGAGTAATTGTTTTC 326091 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || |||||||| ||||||||||| ||||| Sbjct 326090 CCGGTAAGAGTCTTAACGAAAATCTGCAT 326062 Score = 113 bits (124), Expect = 4e-19 Identities = 154/211 (73%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| ||||||||| |||||| || ||||| || | || |||||| |||||| | Sbjct 326040 CAAG-TGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGATAAGGTTCTTCCATCTTCCA 325982 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 ||||||||| ||||| || | |||||| ||||| || ||||||||||| || ||||| | Sbjct 325981 ATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGGA 325922 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAG-TACA--TTCGAGAGTAACAGTTT 563443 | || || || ||||| || |||| || | || ||| ||||||| ||||| Sbjct 325921 TCTTGGCCTTGACGTTGTCAATGGTGTCAG---AAGCTTCAACTTCAAGAGTAATAGTTT 325865 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || | ||| || || ||||| ||||| Sbjct 325864 TTCCTGTCAAAGTCTTGACAAAAATCTGCAT 325834 >seq6 Length=947499 Score = 116 bits (128), Expect = 3e-20 Identities = 323/493 (66%), Gaps = 7/493 (1%) Strand=Plus/Plus Query 550040 CAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTAT 550099 ||| | || || || ||||| || || || || ||||| ||||||||||| || |||||| Sbjct 162647 CAACACGGAAAGGTCGAAATCATCGCTAACGACCAAGGAAACAGAACTACACCCTCTTAT 162706 Query 550100 GTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGT 550159 || |||||| || |||||| ||| | || ||||| || || | |||| | | Sbjct 162707 GTAGCTTTCAACGACTCTGAACGTTTGTTAGGAGATGCTGCCAAGAACCAAGTCGCCATG 162766 Query 550160 AATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCG 550219 || || || || | || || || || | | || ||||||| || | || Sbjct 162767 AACCCCCAGAACTCTGTCTTCGACGCCAAGAGACTCATCGGAAGAAAGTTCGACGAACAA 162826 Query 550220 ACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCT---GGAAAA 550276 | ||||| | || |||||||||||||| ||| | ||| | ||| |||||| Sbjct 162827 GCCGTTCAAGATGACATGAAGCATTGGCCATTCAAGGTTGAAGCCGCTTCATCAGGAAAA 162886 Query 550277 CCTTATATTGAAGCT--ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTT 550334 | || | | | | ||| | || | || |||| | || ||| || | | Sbjct 162887 TGCAAGATCGTTGTTGAATTCAAGGGAGAAAAG--AAGGAATTCACCCCCGAAGAAGTCT 162944 Query 550335 CATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTA 550394 | || ||| | || | || ||||| |||| ||| |||| | || || ||| Sbjct 162945 CCTCCATGATCTTGACCAAGATGAAGGAAACTGCCGAAGCTTACTTGGGACACACCGTTT 163004 Query 550395 CGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAG 550454 | || || || | ||||| ||||| || || |||||||| ||| | ||||| || || | Sbjct 163005 CTGACGCCGTCGTCACTGTTCCAGCTTACTTCAATGACTCCCAAAGACAAGCCACCAAGG 163064 Query 550455 ATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTG 550514 | || ||| ||||||||||||||||| || | || || || || || |||||||||| Sbjct 163065 ACGCCGGAGCCATTGCTGGACTTAATGTCCTCAGAATCATTAACGAGCCAACTGCTGCTG 163124 Query 550515 CACTTGCATATGG 550527 | | || ||||| Sbjct 163125 CCATCGCTTATGG 163137 Score = 116 bits (128), Expect = 3e-20 Identities = 137/183 (75%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 |||||||| || | || || | |||||| | ||| ||||| ||||| ||||||||| Sbjct 442913 ATATTGTAGTCGGAGAGGGTACGGCCATCTTCTAATTGCTTTCCAGCAAAGATAAGTCTT 442972 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 || || || |||||||||||||| || ||||||||||| || || || || || Sbjct 442973 TGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCGATGGTG 443032 Query 563413 TCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | || || | | || |||| |||||| |||||||| ||||||||||||||||| Sbjct 443033 TCGGATGCCTCAACCTCCAAG-GTAATAGTTTTTCCAGTAAGTGTTTTAACGAAAATTTG 443091 Query 563472 CAT 563474 ||| Sbjct 443092 CAT 443094 Score = 109 bits (120), Expect = 4e-18 Identities = 151/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 563271 ATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGT 563328 |||||| || ||| ||||| || ||||| ||| || |||||| |||||| | | Sbjct 442207 ATGAAGAGTTGACTCCTTTTGG--ATGTTGTAGTCACTTAAAGTTCTCCCATCTTCTAAT 442264 Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || ||||||||||| ||||||||||| || || ||||| ||||||||||| ||||| || Sbjct 442265 TGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCTTTGTCTTGGATC 442324 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447 || || || || || || |||| || || | | || |||| |||||| || Sbjct 442325 TTAGCCTTGACATTATCGATGGTGTCAGATGCCTCAACCTCCAAG-GTAATAGTTTTTCC 442383 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| || || ||||| || ||||| Sbjct 442384 AGTAAGGGTCTTGACGAAGATCTGCAT 442410 Score = 107 bits (118), Expect = 2e-17 Identities = 140/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 563286 TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAAT 563345 ||||| || ||||| || | ||||| | | || || | ||| ||||||||||| || Sbjct 441996 TTTGG--ATGTTGTAGTCTGAAAGAGTACGTCCGTCCTCCAATTGCTTTCCGGCAAAGAT 442053 Query 563346 AAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTC 563405 |||||||||||| || ||||| |||||||| || ||||||||||| || || || Sbjct 442054 AAGTCTTTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATC 442113 Query 563406 AATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 ||| || || | | | | || ||| | ||||| || || || || |||||||| || | Sbjct 442114 AATAGTGTCCGAG-GCTTCCACTTCCAAAGTAATTGTCTTTCCGGTGAGAGTTTTGACAA 442172 Query 563465 AAATTTGCAT 563474 |||||||||| Sbjct 442173 AAATTTGCAT 442182 Score = 107 bits (118), Expect = 2e-17 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||| | ||| || | ||||||||| ||| ||||| || ||||| ||| || || Sbjct 442418 CTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGG--ATGTTGTAGTCACTTAAAG 442475 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 |||| ||| || | ||| ||||||||||| ||||||||||| || || ||||| |||| Sbjct 442476 TTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTC 442535 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCG 563430 |||| || ||||| || || ||| || || || || || | | || ||| Sbjct 442536 CTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGAC-TTCC 442594 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||||| |||||||| || || ||||| |||||||| Sbjct 442595 AGGGTGATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 442638 Score = 98.7 bits (108), Expect = 8e-15 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||| | ||| || | ||||||||| ||| ||||| || ||||| ||| || || Sbjct 442646 CTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGG--ATGTTGTAGTCACTTAAAG 442703 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 |||| ||| || | ||| ||||||||||| ||||||||||| || || ||||| |||| Sbjct 442704 TTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTC 442763 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCG 563430 |||| || ||||| || || ||| || || || || || | | || ||| Sbjct 442764 CTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGAC-TTCC 442822 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||||| || || | ||| || ||||| |||||||| Sbjct 442823 AGGGTGATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 442866 >seq67 Length=163726 Score = 100 bits (110), Expect = 2e-15 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 550390 AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTAC 550449 ||| | | |||| || | || || || || ||||| ||||| || ||| | ||||| || Sbjct 39008 AGTCAAGAATGCCGTCGTTACCGTTCCTGCTTATTTCAATGATTCTCAAAGACAAGCCAC 39067 Query 550450 TAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 || |||||||||| |||||||| | ||||| ||| | ||||||||||||| || || Sbjct 39068 AAAGGATGCTGGACAAATTGCTGGTTTGAATGTACTTAGAGTTATCAATGAACCAACAGC 39127 Query 550510 TGCTGCACTTGCATATGG 550527 ||||| ||||| ||||| Sbjct 39128 AGCTGCTCTTGCTTATGG 39145 >seq42 Length=343515 Score = 96.9 bits (106), Expect = 3e-14 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 || || |||||| | || ||| | |||||||| | |||||||| ||| ||| | Sbjct 229137 TTCTCTCCAGAAGAGATCTCAGCCATGGTTTTGACCAAAATGAAGGAAATCGCCGAAACA 229196 Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 | | || | ||||| | | | || ||| | || || ||||| ||||| ||||| | Sbjct 229197 TACCTCGGAAAGGAAGTCAAGCACGCCGTAGTCACCGTCCCAGCTTATTTCAATGATGCC 229256 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 ||| | |||||||| || ||||| ||| || |||||| | || | | | || ||| Sbjct 229257 CAAAGACAAGCTACCAAGGATGCCGGAACCATCGCTGGATTGAACATCGTAAGAATCATC 229316 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||||| || || ||||| | |||||||||||||| || Sbjct 229317 AACGAACCAACAGCCGCTGCTATCGCATATGGACTTGACAA 229357 >seq2 Length=2086053 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || |||||||| || | |||||| ||||| |||||||||||||| || |||||||| || Sbjct 1233669 TTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATCTTG 1233610 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTA 563451 ||| || || || || || | | | ||||| |||| |||||||| ||| Sbjct 1233609 GCTTTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATTGTTTTACCGGTA 1233550 Query 563452 AGAGTTTTAACGAAAATTTGCAT 563474 || || || |||||||||||||| Sbjct 1233549 AGGGTCTTTACGAAAATTTGCAT 1233527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029271091395790