Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq32 161 8e-35 seq6 125 6e-24 seq39 84.2 2e-11 >seq32 Length=411647 Score = 161 bits (178), Expect = 8e-35 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | | | ||| || |||||||||||||||||||| || ||||| |||| Sbjct 326062 TTCCTCCTCTAAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGG 326003 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||||| |||| |||||||| || || ||||| || || | |||||||| || | Sbjct 326002 ATAAGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGG 325943 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || ||||| || || || || | || | |||||||| | ||| | Sbjct 325942 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAA 325883 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| | ||||| || || ||||| || ||||| |||||||| Sbjct 325882 CTTCAAGAGTAATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCAT 325834 Score = 161 bits (178), Expect = 8e-35 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 ||||| || |||||||||||||||||||| || ||||| |||| | ||| | |||| Sbjct 326273 AAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGCCCATCT 326214 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||||||||| || ||||| || | ||| |||||||| || ||||| ||||| || ||| Sbjct 326213 TCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCT 326154 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || ||| || | || | |||||||| | ||| ||||||||||| | ||| Sbjct 326153 TGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACTTCAAGAGTAATTGTT 326094 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | ||| || || || |||||||| Sbjct 326093 TTCCCGGTAAGAGTCTTAACGAAAATCTGCAT 326062 Score = 118 bits (130), Expect = 8e-22 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||||||||| ||||| | |||||||| || ||||| ||||| || ||||| ||||| Sbjct 325705 CTTACCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTT 325646 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | || ||||| | ||| || |||||||||| || |||||||| Sbjct 325645 GGCCTTGACATTATCGATGGTATCAGAAGCTTCAACCTCAAGAGTGATGGTCTTGCCGGT 325586 Query 101446 TAAAGTTTTTACAAATATCTGCATGGTT 101473 | ||||||||| || |||||||| ||| Sbjct 325585 GAGAGTTTTTACGAAAATCTGCATTGTT 325558 >seq6 Length=947499 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | | | || ||||||||||| || || ||||| || ||||| || Sbjct 442638 TTCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCAC 442697 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| |||| ||||||||||| || ||||| || | | ||||| || || | Sbjct 442698 TTAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAG 442757 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || ||||| || || ||| || | || | ||||| || | ||| | Sbjct 442758 GGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGA 442817 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| || |||| ||||| ||||| ||||| || || || || ||||| Sbjct 442818 CTTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 442866 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| ||||| | ||| ||||| ||||| || ||||| || | | ||| | | || || Sbjct 441973 AACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGAAAGAGTACGTCCGTCCTC 442032 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||||||| || ||||| || | | || || || || || || ||||| || ||||| Sbjct 442033 CAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCCTTCCTTGTCTTG 442092 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| || ||| | || | |||||| || | ||||||||| | ||| | || || Sbjct 442093 AATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCACTTCCAAAGTAATTGTCTT 442152 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | |||||| ||||| || ||||| Sbjct 442153 TCCGGTGAGAGTTTTGACAAAAATTTGCAT 442182 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | | | || ||||||||||| || || ||||| || ||||| || Sbjct 442410 TTCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCAC 442469 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| |||| ||||||||||| || ||||| || | | ||||| || || | Sbjct 442470 TTAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAG 442529 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || ||||| || || ||| || | || | ||||| || | ||| | Sbjct 442530 GGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGA 442589 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| || |||| ||||| || || | || || || || || ||||| Sbjct 442590 CTTCCAGGGTGATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 442638 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| | | | ||| || || || || |||||||| || |||||||| |||| Sbjct 442866 TTCCTCCTCTGAGTCTAAGAACCAAGTGGAGAGTTGATTCTTTCTGGATATTGTAGTCGG 442925 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || || | | |||| || |||||||| || ||||| || | | ||||| || || | Sbjct 442926 AGAGGGTACGGCCATCTTCTAATTGCTTTCCAGCAAAGATAAGTCTTTGTTGGTCTGGAG 442985 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || ||||||||||| || ||| | || | ||||| || | || | Sbjct 442986 GAATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCGATGGTGTCGGATGCCTCAA 443045 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | ||||| || || | ||||| || || || ||||| Sbjct 443046 CCTCCAAGGTAATAGTTTTTCCAGTAAGTGTTTTAACGAAAATTTGCAT 443094 >seq39 Length=348097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| || || | |||||||| || ||||| ||||| || ||||||||||| Sbjct 169958 CTTACCGGCAAAGATTAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGAATTTT 169899 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 |||||| | || | |||||| || | || || ||||| || | || || || || Sbjct 169898 AGCCTTTACATTCTCGATAGTGTCTGAAGCCTCTACCTCAAGGGTAATGGTCTTACCAGT 169839 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || || || || || || ||||| Sbjct 169838 CAATGTCTTGACGAAGATTTGCAT 169815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396276125238147