Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq76 167 1e-36 seq13 167 1e-36 seq30 141 5e-29 seq108 107 1e-18 >seq76 Length=128862 Score = 167 bits (184), Expect = 1e-36 Identities = 300/436 (69%), Gaps = 2/436 (0%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 ||| || | | |||||| ||||| || | ||||| | ||||| || || | ||| | Sbjct 13622 TCAGCTCTTTTCATAAACAAATCAGGGACCCACAACCCGTAAAACAAGTCACGCGCACG- 13680 Query 25982 ATTTCT-TCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 ||| || ||| |||| | |||||| |||| || || || ||||| ||||| | ||||| Sbjct 13681 ATTGCTATCTGTTCCATCATTCTTCTTTAATTCCAAAAATTCAAATATATCAGCATGCCA 13740 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 ||||| | || || |||||| |||| |||||| || ||||| | || ||||| Sbjct 13741 GGGTTCAAGGTAAATGGCAAAAGCACCTGGTCTTTTATTACCTCCTTGGTTGACATATCT 13800 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT 26160 ||| || | || || |||| | |||||||||||| ||| | |||| || || || | Sbjct 13801 TGCTGTGTTGTTAAATACTTGGAGCATTGGAACTAAACCATTAGAAACGCCATTCGTTCC 13860 Query 26161 ATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCA 26220 || || | |||| | | || |||| |||| | | | || ||||| || ||| | Sbjct 13861 ATTTATGGCAGTTCCTTTAGCTCGAATACAGTGAACGTTCAATCCTATTCCTCCTGCCGA 13920 Query 26221 TTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280 ||| ||||| ||||| | || | || || ||||||||||| || ||| | Sbjct 13921 TTTCGAAATTAAGGCACATTGAGATAAAGTGTCAAAAATTCCTTTGATTGAATCCTCAGA 13980 Query 26281 CATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGT 26340 ||| || |||||||||||| ||||||| | | || ||||||| ||||| | || Sbjct 13981 CATAGTCAACAAAAAACAAGAACATAATTGAGGAGTAGGGGTTCCTGCGTTAAAAAGAGT 14040 Query 26341 CGGTGTAGCATGAGTA 26356 || |||||||| ||| Sbjct 14041 TGGAGTAGCATGCGTA 14056 >seq13 Length=696343 Score = 167 bits (184), Expect = 1e-36 Identities = 296/428 (69%), Gaps = 8/428 (2%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCT-TCTT 25991 |||||| ||||| || | ||||| | ||||| || || | || | ||| || ||| Sbjct 650612 CATAAACAAATCAGGGACCCACAACCCGTAAAACAAGTCACGTGCACG-ATTGCTGTCTG 650670 Query 25992 TTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 |||| | ||||||||||| || || || ||||| ||||| | ||||| ||||| | | Sbjct 650671 TTCCATCATTCTTTTTTAATTCCAAAAATTCAAATATATCAGCATGCCAGGGTTCAAGGT 650730 Query 26052 AGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCAT 26111 | || |||||| |||| |||||| || ||||| || || |||||||| || | | Sbjct 650731 AAATGGCAAAAGCACCTGGTCTTTTATTACCTCCTTGGTCGACATATCTTGCTGTGTTGT 650790 Query 26112 TGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGG 26171 | || |||| | |||||||||||| ||| | |||| || || || | || || | Sbjct 650791 TAAATACTTGGAGCATTGGAACTAAACCATTAGAAACGCCATTCGTTCCATTTATGGCAG 650850 Query 26172 ATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAG 26231 |||| | | || |||| |||| | | | || ||||| || ||| |||| ||||| Sbjct 650851 TTCCTTTAGCTCGAATACAGTGAACGTTCAATCCTATTCCTCCTGCCGATTTCGAAATTA 650910 Query 26232 CTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATA 26291 ||||| | || | || |||||||||||||| || || | |||| || | Sbjct 650911 AGGCACATTGAGATAAAGTGTCGAAAATTCCTTTGATTGAGTCTTCAGACATTGTCAACA 650970 Query 26292 AAAAACAAGAAGATAATTGCGAATGAGTT---GTTCCTGAATTAAATAATGTCGGTGTAG 26348 | ||||||||||| ||||| | ||||| ||||||| ||||| | || ||||||| Sbjct 650971 AGAAACAAGAAGACAATTG---AGGAGTTAAAGTTCCTGCGTTAAACAGAGTAGGTGTAG 651027 Query 26349 CATGAGTA 26356 | || ||| Sbjct 651028 CGTGGGTA 651035 >seq30 Length=447140 Score = 141 bits (156), Expect = 5e-29 Identities = 233/336 (69%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | || |||||||| | ||||||| ||||| | || | | ||| | Sbjct 98514 CATAAAAAGGTCAGGAATCCATAGCCCATAAAACAAATCACGTGCACGATTAGATTCAGT 98573 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| | ||| ||| || ||||||||||| || ||||| | ||||| ||||||| ||| Sbjct 98574 TCCATCATTTTTTCGTAACTCTAAGAAATCGAAGATATCAGCATGCCAAGGTTCTAGATA 98633 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 || |||||| ||| |||||| || |||||||| || || | || || | ||| Sbjct 98634 AATGGCAAAAGCACCAGGTCTTTTGTTGCCTCCTTGATCAACATACTTAGCGGTATTATT 98693 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 ||| || | |||||| || || | |||| |||||| ||| || || | || ||| || Sbjct 98694 GAAGACCTGCAACATAGGGACAAGTCCATTTGAAATTCCATTAGTTCCATTAATAGCTGA 98753 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 || | | ||| ||| || ||| | || |||||||| || |||||||||| Sbjct 98754 CCCCTTAGCTCTGATACAATGGACATTCAAGCCAATTCCACCTGCAGATTTTGAAATCAA 98813 Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTAT 26268 |||||| | || | || |||||||||||||| || Sbjct 98814 TGCACATTGAGACAAGGTGTCGAAAATTCCTTTAAT 98849 >seq108 Length=67188 Score = 107 bits (118), Expect = 1e-18 Identities = 202/297 (68%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| || | ||| |||||||||| | ||||| || |||| || | | | ||| | Sbjct 6010 CATGAAAAGATCCGGAATCCACAGCCCGTAAAACAAGTCTCGTGCCCGATTGGCATCTGT 5951 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || | ||| || || || || | ||||| | ||||| | ||||||||||||| ||| Sbjct 5950 CCCATCATTTTTCTTAAGCTCCAGAAAATCCATGATATCAGCATGCCATGGTTCTAGATA 5891 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 ||||||||| ||| |||||| ||| ||||| || || || | || || ||| Sbjct 5890 AATAGCAAAAGCACCAGGTCTTTTGTTTCCTCCTTGGTCGACATACTTGGCGGTACTATT 5831 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 ||| |||| | ||||||||| | |||| | || | ||| || || | || || ||| Sbjct 5830 GAATACTTGGAGCATTGGAACAAGTCCATTCGAGATTCCATTAGTACCATTGATAGCGGA 5771 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAAT 26229 ||| | | ||| || | ||| | | | |||||||| ||||| |||| || || Sbjct 5770 ACCTTTGGCTCTGATTTTGTGGACGTTGAGTCCGATTCCTCCAGCAGATTTAGAGAT 5714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253038547471325