Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq98 87.8 2e-12 >seq98 Length=84475 Score = 87.8 bits (96), Expect = 2e-12 Identities = 273/416 (66%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 138287 TAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATG 138346 ||| || | ||| ||||| | |||||||||||| ||||| || || || || | ||||| Sbjct 69661 TAGTCCAATCTGAGCATTCAAATTTGCACCATCTAGATAAACTTGTCCTCCGTATTCATG 69602 Query 138347 AACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGT 138406 || | || | | ||||| ||| |||||| |||||||| || ||||| ||||| Sbjct 69601 TACCTTGGCGCAAACATCCATGATGGTTGATTCAAAAACACCATGCGTTGATGGGTATGT 69542 Query 138407 AATCATAATACATGAGAGTTCA--AATGTATTCATGATTGCTTTCTTCTCTAGATCTTTG 138464 || ||||||| | | |||| | |||| | | ||||| ||||||||| Sbjct 69541 AACCATAATAGCTCCCAATTCATTCTTATATTTTTCA--GCTTTAACGCATAGATCTTTA 69484 Query 138465 ATGTCTATGTTGCCATCATCATCACACTTGACACCTACAACTTTCA--TTCCTGCCATGA 138522 | || || || |||| | || | | || ||||| | | || | ||| Sbjct 69483 AAGTTGATATTTCCATGTTTGTCTGAGTCAACGGGTACAATTCGGAAGTTAC--ACATTT 69426 Query 138523 CTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTAT 138582 ||| |||||| ||||||||||| ||||| || |||| ||| | |||||||| | Sbjct 69425 GCGCAGAAGCAGGGTTAGTTCCATGAGCTGATGAGGGAATCAAACAAATATTTCTTTGTT 69366 Query 138583 CAT-CTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGT 138641 | | | | | ||||| |||| ||| ||||| | || || ||||| || || | Sbjct 69365 CTTGCCCAATAGACTTGA-GATACCCTTTAATTGCCAGCATACCAGCATATTCTCCATTA 69307 Query 138642 GATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATAACCA 138697 | ||| ||| ||||| | ||| | | |||| |||| || || | ||| | ||| Sbjct 69306 GCTCCACTGTTTGGTTGGAGTGAGAAATTATCATAACCAGTAATCTGACAAAGCCA 69251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578994991146920