Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq16 205 1e-47 >seq16 Length=590713 Score = 205 bits (226), Expect = 1e-47 Identities = 409/600 (68%), Gaps = 12/600 (2%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || |||||||| ||||| ||||||| ||| |||||||| ||| |||||||||||| Sbjct 481308 CCGGTGGCAATGACAAAGTCATCAGCTTCAGTGTGTTGAAGAATTCTCCACATAGCCTCC 481367 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 ||||| || | ||||| ||||| || | | || | || ||||| | | || Sbjct 481368 ACATATTCCTTAGCATGCCCCCAATCTCTCTTAGAGTCGATGTTGCCTAGGGAGACGCAT 481427 Query 47908 TCTTGCTTACCTTCAGAGATTGCTTTT----AATGCTCTTGTAATCTTACGAGTTACAAA 47963 || || ||| || ||| | |||| | | | |||||||| || ||||| || Sbjct 481428 TCCTGGA-ACC--CA-AGACTAATTTTTGCAACAGAACGAGTAATCTTTCGGGTTACGAA 481483 Query 47964 AGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCC 48023 || |||||||||||||||||| |||||||| || |||||| || | || | || || Sbjct 481484 AGAAGGACCACGTCTTGGAGATTCGTGATTAAAGAGGATACCATTAGATCCAAAAATACC 481543 Query 48024 GTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGG 48083 | | ||| | ||| ||||| || ||||| || |||| | ||||||||| ||||||| Sbjct 481544 ATGAGCTTCTCTATAATTCTTGACAATCCAATAAGCATACAACTTTGCAACAGCATAAGG 481603 Query 48084 AGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAG 48143 | | |||||| || || || ||||| | || || | | ||| ||||| ||||| | Sbjct 481604 ACTTCTTGGATAAAATGGAGTTGTCTCAGATTGAGGGATTTGTTGAACCTTTCCATACAA 481663 Query 48144 TTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCA--TCTCAAGCAAACGGACT 48201 ||| ||| || |||||||| | |||||| || || || | ||||||| || Sbjct 481664 CTCAGAGGTCGAAGCTTGATAAAAACGAACTTTACTTTGCAATCCACAAGCAA--CAACC 481721 Query 48202 GCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGGCATCTCA 48261 || || | || | || || || | ||||| | | | |||||||| |||| ||| Sbjct 481722 GCATCCAACAAACGCAAAGTTCCAACAGCATCAACTTCAGCTGTATACTCTGGCAACTCG 481781 Query 48262 AACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGC 48321 || ||| || |||||| ||| || | | || ||||| ||| | ||||| || | Sbjct 481782 AAACTAACTTTCACATGAGACTGGGCAGCTAAATGGTAAATTTCAGCAGGTTGGACTTTT 481841 Query 48322 TGAATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGA 48381 ||||| | | |||| | ||| || || | |||||||||||||||| |||||| Sbjct 481842 GAAATAATTTTAATTAAACAGGAAGAATCGGTCATATCTCCATAATGCAATTGGAATTGA 481901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665490481901720