Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq76 168 8e-37 seq13 161 1e-34 >seq76 Length=128862 Score = 168 bits (186), Expect = 8e-37 Identities = 606/930 (65%), Gaps = 26/930 (3%) Strand=Plus/Minus Query 75932 AAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAAT 75991 |||||||| || |||| || || || ||| | ||| | ||||| || || |||| || Sbjct 13428 AAGGATGCCTGCAACAGAAAAAGCAATCAACAAAATCTTGGAACTATTAAATGCTCCAAC 13369 Query 75992 CTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCA 76051 || ||||| |||||| | | ||| || || |||| |||||||| ||||||||| Sbjct 13368 CTCTGCACTGAAATTGTTCAATACTCATCACCCGAGGAGATTGCTGTTTGTAATTTGGCA 13309 Query 76052 TCAATCGCCCTTC-CAAAGT----AT-GTCAATGAAGAGACTCGCACTTTTGATTATGAA 76105 ||||| ||| | |||| | || || | | || || | | ||||||| || | Sbjct 13308 TCAATTGCCTTAAACAAATTCGTTATAGTTGACGGCGATACAAGGAAATTTGATTTTGCA 13249 Query 76106 AAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAAT 76165 |||||||||||| | | || |||| || | ||| | || ||| ||||| || Sbjct 13248 AAACTTCATGAAGTAGCCAAAGTTGTAACTAGAAACTTGAATAAAGTTATTGATGTCAAC 13189 Query 76166 TTTTATCCCGTTGAGACT-GCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGG 76224 | ||| |||| | || || |||| || || ||| ||||||||||||||||||||| Sbjct 13188 TATTA-CCCGGTCCCACAAGCAAGAAATTCAAACATGAAACACAGACCTATTGGTTTGGG 13130 Query 76225 TGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGC 76284 ||| ||||| | ||||| | || || ||| || |||||| ||| || || Sbjct 13129 TGTCCAAGGATTAGCGGACGCTTTCATGTTGATGAAATATCCATTTGCTTCTTCCGATGC 13070 Query 76285 CAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTG 76344 ||||| | || || |||||||| || ||||| | || |||| || ||| Sbjct 13069 AAAGGATTTAAACAAAAAAATATTTGAAACAATCTATCATGGTTCGTTGGAAGCATCTTG 13010 Query 76345 TGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGG 76404 ||||||||||||| | | || | || || | | ||||| || | || |||| Sbjct 13009 TGAATTGGCTGAAAGCGACGGACCATACTCAACCTACGCTGGTTCCCCTGTTTCTAAAGG 12950 Query 76405 GGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA--AGCTCAACTACGACTGGGATGTT 76462 | || || | ||| |||| |||| || | |||| || || | || |||| | Sbjct 12949 AATTCTGCAATATGACATGT-GGAATGTTACACCATCAGATC-TTTGGGATTGGGGTCGG 12892 Query 76463 CTCAAGGAACGCA-TCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCACCAATG 76519 || |||||| | | | | | | ||| || | | | ||||| | | ||||| ||| Sbjct 12891 CTTAAGGAAAGAATTGCATTACATGGG-GTTAG--AAATTCTTTGCTCCTTGCACCTATG 12835 Query 76520 CCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACA 76579 |||||||| || ||||| ||||| | || || |||||| | |||| ||||| ||| | Sbjct 12834 CCAACAGCTTCAACCGCTCAAATTCTTGGAAACAATGAAAGTATTGAGCCATATACATCT 12775 Query 76580 AACATCTA--CCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCG 76637 || || || | | | | ||| | || || ||| |||||||| || | Sbjct 12774 AATATGTATTCACGTCGTGTAACCT--CTGGCGACTTTCAAATTGTCAATTCACATTTAC 12717 Query 76638 TCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC--TCATGGTGAA 76695 | |||||||| || || | | ||| | | | | || ||| ||| | Sbjct 12716 TTAATGACCTTGTCAATCTTAATTTATGGACTGACAAAGTAAA--ATCAGAGATGATAGC 12659 Query 76696 AGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCG 76755 ||| ||||| || |||||||| || | || || ||| |||| || ||| | || ||| Sbjct 12658 AGCAGGTGGGTCTATTCAAAAGATTGCCGAAATTCCAAATGAAATTAAGGAACTTTACAA 12599 Query 76756 CACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTT 76815 ||||| |||||||||| || ||| || | | ||||| || |||||||| || Sbjct 12598 AACAGTCTGGGAAATCAGTCAAAAGGATATCTTAAATATGGCAGCTGATCGTGGAGCATT 12539 Query 76816 CATTGATCAAAGTCAAAGTATGAATCTATT 76845 ||| |||||| ||| ||||||||||| Sbjct 12538 CATCGATCAATCTCAGTCAATGAATCTATT 12509 >seq13 Length=696343 Score = 161 bits (178), Expect = 1e-34 Identities = 657/1014 (65%), Gaps = 30/1014 (3%) Strand=Plus/Minus Query 75932 AAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAAT 75991 |||||||| || |||| || || || ||| | ||| | ||||| || || |||| || Sbjct 650407 AAGGATGCCTGCAACAGAAAAAGCAATCAACAAAATCTTGGAACTATTAAATGCTCCAAC 650348 Query 75992 CTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCA 76051 || ||||| |||||| | | ||| || || |||| |||||||| ||||||||| Sbjct 650347 CTCTGCACTGAAATTGTTCAATACTCATCACCCGAGGAGATTGCTGTTTGTAATTTGGCA 650288 Query 76052 TCAATCGCCCTTCCAAAGTATGT--CAATGAA----GAGACTCGCACTTTTGATTATGAA 76105 ||||| ||| | || | || || | | || || | | ||||||| || | Sbjct 650287 TCAATTGCCTTAAACAAATTCGTTGCAGTTGACGGCGATACAAGGAAATTTGATTTTGTA 650228 Query 76106 AAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAAT 76165 |||||||||||| | | || |||| || | ||| | || ||| ||||| || Sbjct 650227 AAACTTCATGAAGTAGCCAAAGTTGTAACTAGAAACTTGAATAAAGTTATTGATGTCAAC 650168 Query 76166 TTTTATCCCGTTGAGACT-GCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGG 76224 | ||| |||| | || || |||| || || ||| ||||||||||||||||||||| Sbjct 650167 TATTA-CCCGGTCCCACAAGCAAGAAATTCAAACATGAAACACAGACCTATTGGTTTGGG 650109 Query 76225 TGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGC 76284 ||| ||||| | ||||| | || || ||| || |||||| ||| ||| || Sbjct 650108 TGTCCAAGGATTAGCGGACGCTTTCATGTTGATGAAATATCCATTTGCTTCTTCTGATGC 650049 Query 76285 CAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTG 76344 ||||| | || || ||||| || || ||||| | || |||| || ||| Sbjct 650048 AAAGGATTTAAACAAAAAAATATTTGAGACAATCTATCATGGCTCGTTGGAAGCATCTTG 649989 Query 76345 TGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGG 76404 ||||||||| ||| | | || | || || | | ||||| || | || |||| Sbjct 649988 TGAATTGGCCGAAAGCGACGGACCATACTCAACCTACGCTGGTTCCCCTGTTTCTAAAGG 649929 Query 76405 GGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA--AGCTCAACTACGACTGGGATGTT 76462 | || || | ||| |||| |||| || | |||| | || | ||||||| | Sbjct 649928 AATTCTGCAATATGACATGT-GGAATGTTACACCATCGGATC-TTTGGGACTGGGGTCGG 649871 Query 76463 CTCAAGGAACGCA-TCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCACCAATG 76519 || |||||| | | | | | | ||| || | | | ||||| | | ||||| ||| Sbjct 649870 CTTAAGGAAAGAATTGCATTACATGGG-GTTAG--AAATTCTTTGCTCCTTGCACCTATG 649814 Query 76520 CCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACA 76579 |||||||| || ||||| ||||| | || || |||||| | |||| ||||| ||| | Sbjct 649813 CCAACAGCTTCAACCGCTCAAATTCTTGGAAACAATGAAAGTATTGAGCCATATACATCT 649754 Query 76580 AACATCTA--CCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCG 76637 || || || | | | | | | | || || ||| |||||||| || | Sbjct 649753 AATATGTATTCACGTCGTGTAACTT--CTGGCGACTTTCAAATTGTCAATTCACATTTAC 649696 Query 76638 TCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC--TCATGGTGAA 76695 | |||||||| || || | | ||| | | | | || ||| ||| | Sbjct 649695 TTAATGACCTTGTCAATCTTAATTTATGGACTGACAAAGTAAA--ATCAGAGATGATAGC 649638 Query 76696 AGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCG 76755 ||| ||||| || |||||||| || | || || ||| |||| || ||| | || || Sbjct 649637 AGCAGGTGGGTCTATTCAAAAGATTGCCGAAATTCCAAATGAAATTAAGGAACTTTATAA 649578 Query 76756 CACAGTGTGGGAAATCAAGATGAAAGATGTCATTGA-CATGGCCGCAGATCGTGGTCGCT 76814 |||||||||||||||| ||||||| | ||| | ||||| || |||||||| | Sbjct 649577 AACAGTGTGGGAAATCAGTCAGAAAGATAT-ATTAATTATGGCAGCTGATCGTGGAGCAT 649519 Query 76815 TCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCT 76874 |||| |||||| ||| ||||||||||| | |||| || || | ||| | ||| Sbjct 649518 TCATCGATCAATCTCAGTCAATGAATCTATTTGTAGAAAAACCTTCGCT-TCCTAATTCT 649460 Query 76875 -CTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTAT 76927 | || ||| | || ||||||| || | ||||| ||| |||||||| Sbjct 649459 ACATCAATGTTCTTTTATAGTTGGAAACTAGGTTTAAAAACTGGAGTGTACTAT 649406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566087696480