Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq32 156 8e-33 seq6 114 2e-20 >seq32 Length=411647 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | || ||| |||| || | |||| ||||| || || |||||| Sbjct 326063 ATTCCTCCTCTAAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCG 326004 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||||| ||||| ||| || ||||||||||| ||||| |||||||| |||||||| || Sbjct 326003 GATAAGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGG 325944 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| || |||| || | || ||| || || |||| ||| Sbjct 325943 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCA 325884 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| ||||| |||||||| ||||| | || || ||||| || |||||| Sbjct 325883 ACTTCAAGAGTAATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCATT 325833 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || |||||||| || || | ||| || ||||| ||||||||||| || | | Sbjct 326243 ATGTTGTAGTCGGACAAAGTACGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGT 326184 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| || || |||||||| || ||||| || |||| ||| | || ||| || Sbjct 326183 TGTTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTG 326124 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | || ||||| ||||| || ||||| || || || || || || || || ||| Sbjct 326123 TCAGAGGCTTCGACTTCAAGAGTAATTGTTTTCCCGGTAAGAGTCTTAACGAAAATCTGC 326064 Query 193359 ATT 193361 ||| Sbjct 326063 ATT 326061 >seq6 Length=947499 Score = 114 bits (126), Expect = 2e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || || | ||||| | |||| ||| | || | ||| || || || Sbjct 442174 AATTTGCATTCCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTT 442233 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| ||| ||||| ||| |||||||| ||||||||||| || | ||| ||||| Sbjct 442234 GTAGTCACTTAAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTG 442293 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| ||||||||||| ||||| || || | || | ||| || || || || Sbjct 442294 GTCTGGAGGGATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGA 442353 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | |||||| || | || |||||||| || || || || || || || || |||||| Sbjct 442354 TGCCTCAACCTCCAAGGTAATAGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCATT 442411 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | || || |||| ||| | || | ||| || || || ||||| Sbjct 442409 ATTCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCA 442468 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 ||| ||||| ||| || ||||| ||||||||||| || | ||| ||||| || ||| Sbjct 442469 CTTAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGA 442528 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| || || | ||| | || || || ||||||| || Sbjct 442529 GGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCG 442588 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || ||||| || || || || || || || ||||||||| Sbjct 442589 ACTTCCAGGGTGATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCATT 442639 Score = 113 bits (124), Expect = 8e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || ||||| | || || |||| ||| | || | ||| || || || Sbjct 442631 ATTTGCATTCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTG 442690 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||| ||||| ||| || ||||| ||||||||||| || | ||| ||||| Sbjct 442691 TAGTCACTTAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGG 442750 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| |||||||| || ||||| || || | ||| | || || || |||||| Sbjct 442751 TCTGGAGGGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAA 442810 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || ||||| || || || ||||| || || | || || || || ||||||||| Sbjct 442811 GCTTCGACTTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCATT 442867 Score = 113 bits (124), Expect = 8e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || ||||||||||| | ||||||||| || || || |||||||| || ||||| || || Sbjct 443229 TTACCGGCAAAAATGAGTCTCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGAATCTTC 443288 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | ||| | || || ||||| |||| ||||| || | || || || || |||||| Sbjct 443289 GCTTTGACGTTGTCGATCGTATCCGAAGCTTCAACCTCCAAGGTGATTGTCTTTCCTGTT 443348 Query 193338 AGCGTTTTTACAAATATTTGCATTTTATTAGT 193369 |||||||||||||| ||||||||| | |||| Sbjct 443349 AGCGTTTTTACAAAAATTTGCATTATGGTAGT 443380 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || |||| |||||| || | || || || || ||||| || Sbjct 441955 ACCACCACGAAGTCTCAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGA 442014 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | || || ||||| ||||||||||| || | ||| || || || ||||| Sbjct 442015 AAGAGTACGTCCGTCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGG 442074 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| || ||||| ||||||| || | ||| |||||| || || | || || Sbjct 442075 GATTCCTTCCTTGTCTTGAATTTTGGCCTTGACATTATCAATAGTGTCCGAGGCTTCCAC 442134 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||| | ||| || || || || || || ||||| ||||| ||||||||| Sbjct 442135 TTCCAAAGTAATTGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCATT 442183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899649103284720