Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq32 123 4e-23 seq6 122 1e-22 seq39 100 4e-16 >seq32 Length=411647 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || ||||| |||||||||||||| | ||||| |||| ||| Sbjct 325833 AATGCAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTC 325892 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||||| || || || ||||| || ||||| || || ||||| || Sbjct 325893 TGACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 325952 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||| || | ||| || || || | |||||| ||||| ||||| || || || Sbjct 325953 ACAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAA 326012 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || ||||| || || | ||| | ||||| || Sbjct 326013 CATCCAAAAAGAATCTACCCTTCACTTGGTTCTTAGACTTAGAGGAGG 326060 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | ||||| | || || || || || || | || || |||| ||| Sbjct 325561 AATGCAGATTTTCGTAAAAACTCTCACCGGCAAGACCATCACTCTTGAGGTTGAAGCTTC 325620 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || || || ||||| ||||| || ||||| || |||||||| || Sbjct 325621 TGATACCATCGATAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGATCA 325680 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 |||||||||||||| ||| |||||| Sbjct 325681 ACAAAGATTGATTTTTGCAGGTAAG 325705 >seq6 Length=947499 Score = 122 bits (134), Expect = 1e-22 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || | ||||||||||| || || | |||||||||| ||| Sbjct 442639 AATGCAAATCTTCGTCAAGACCCTTACTGGAAAAACCATCACCCTGGAAGTCGAAGCTTC 442580 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||||| ||| ||| || ||||| || ||||| || |||||||| || Sbjct 442579 CGACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCA 442520 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||| | || | |||||| ||||| | || ||| ||||||||| || || | Sbjct 442519 ACAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACA- 442461 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | ||||||| ||| | || |||||||| || | ||| | ||||| || Sbjct 442460 -ACATCCAAAAGGAGTCAACCCTTCATTTGGTCCTCAGACTCAGAGGAGG 442412 Score = 118 bits (130), Expect = 2e-21 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || || | || || | ||||||||||||||||| || || || || | || Sbjct 442411 AATGCAGATCTTCGTCAAGACCCTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 442352 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || || || || ||| || ||||| |||||||| || |||||||| || Sbjct 442351 TGACACCATCGATAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCA 442292 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||| | || | |||||| ||||| | |||||| ||||||||| || || | Sbjct 442291 ACAAAGACTTATCTTTGCCGGAAAGCAATTAGAAGATGGGAGAACTTTAAGTGACTACA- 442233 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATT 156040 | ||||||| ||| | || |||||||| || || ||||| Sbjct 442232 -ACATCCAAAAGGAGTCAACTCTTCATTTGGTCTTGAGATT 442193 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||||||| | ||||||||||||||||| || || || || | || Sbjct 443095 AATGCAAATTTTCGTTAAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC 443036 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || || || ||||| ||||| || ||||| || |||||||| || Sbjct 443035 CGACACCATCGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCA 442976 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||| | || | ||| || ||||| | |||||| | | || | || || || || Sbjct 442975 ACAAAGACTTATCTTTGCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACAA 442916 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| ||||| | || || || || || | ||| | ||||| || Sbjct 442915 TATCCAGAAAGAATCAACTCTCCACTTGGTTCTTAGACTCAGAGGAGG 442868 >seq39 Length=348097 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 155809 ATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAG 155868 |||||| | | ||||||||| || | || ||||||||||| || || ||||| | | Sbjct 169801 ATTTATAGACGATAATGCAAATCTTCGTCAAGACATTGACTGGTAAGACCATTACCCTTG 169860 Query 155869 AAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCA 155928 | || || | ||| || | ||| || || || |||||| ||||| || ||||| | Sbjct 169861 AGGTAGAGGCTTCAGACACTATCGAGAATGTAAAGGCTAAAATTCAAGACAAGGAAGGAA 169920 Query 155929 TACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 | |||||||| ||||||||||| || | |||||||||| Sbjct 169921 TTCCTCCAGATCAACAAAGATTAATCTTTGCCGGTAAG 169958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731867691103600