Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq32 123 5e-23 seq6 96.9 6e-15 >seq32 Length=411647 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || |||||||||| | || || || | |||| ||||| || || || || Sbjct 326063 ATTCCTCCTCTAAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCG 326004 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | | || ||||||||||| |||||||| |||||||| ||||| || || Sbjct 326003 GATAAGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGG 325944 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || || || || || || || || | ||| Sbjct 325943 GGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCA 325884 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| |||||||| ||||| || || || || || | || ||||||||| Sbjct 325883 ACTTCAAGAGTAATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCATT 325833 >seq6 Length=947499 Score = 96.9 bits (106), Expect = 6e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 171858 AATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCA 171917 || || ||||| | ||| | ||| || || || || || ||||| || | || Sbjct 442199 AAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACTTAAAGTTCTCCCATCT 442258 Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977 || ||||| || || ||||| || | ||| |||||||| || || ||||||||||| ||| Sbjct 442259 TCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGGGATTCCTTCTTTGTCT 442318 Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT 172037 || || ||| || |||||| || || || || | || || || | ||||| ||| Sbjct 442319 TGGATCTTAGCCTTGACATTATCGATGGTGTCAGATGCCTCAACCTCCAAGGTAATAGTT 442378 Query 172038 TTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| | || || | ||| ||||||||| Sbjct 442379 TTTCCAGTAAGGGTCTTGACGAAGATCTGCATT 442411 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| |||||||| | |||||||||||| ||||| |||||||| || ||||| || || Sbjct 443229 TTACCGGCAAAAATGAGTCTCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGAATCTTC 443288 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||| || || || ||||| || | ||| || || | || || || || || ||| Sbjct 443289 GCTTTGACGTTGTCGATCGTATCCGAAGCTTCAACCTCCAAGGTGATTGTCTTTCCTGTT 443348 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | ||||| | || || |||||| Sbjct 443349 AGCGTTTTTACAAAAATTTGCATT 443372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905130671011800