Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq30 120 9e-22 seq59 100 8e-16 seq28 96.9 1e-14 >seq30 Length=447140 Score = 120 bits (132), Expect = 9e-22 Identities = 487/751 (65%), Gaps = 31/751 (4%) Strand=Plus/Plus Query 155637 ACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTA 155696 ||||| ||| ||||| ||||| | ||||| || || | ||| | |||||| ||| Sbjct 98233 ACAATTTCAGTGCACAAATTAGAGCATTTGATAGTTCCAAGATTTTGTTGGTTACTTTTT 98292 Query 155697 CTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGA 155756 ||||| |||||||| ||||| |||||||| ||| ||||||| || || || || Sbjct 98293 CTGTTGCAAGCATCTTTGTAAAGAATGTAGGGGTTTCCTGTTTCAATTTGACTTTCGGCT 98352 Query 155757 ATCTTTAGCCAGAGGTCACGGGCATTAATTTG--CTTGTTGTATCTGCCTTCCGACT-CA 155813 ||||| | | || | | || | | ||| || | | | ||| || ||| | || Sbjct 98353 ATCTTCTTCAAAAGAGCTCTTGCTCTGACTTGAACTCGATATTTCT---TTTCGAGTTCA 98409 Query 155814 TATTTCA--TATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACT 155871 ||||| | |||| || |||| | || | || | ||||| || |||||||| | Sbjct 98410 TATTTAACGTATAAGGC-TTCGA-ATTCTTGTCCCCAGCAATCGGCCAAGCCAGGGCATT 98467 Query 155872 TATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTC--CATAAATACATC 155929 || || || | || ||||| || | | | |||| | || |||||| | || Sbjct 98468 CATTAGGACACATAAGGGACCACATGTCGT--CGGATTTGGCTCTTTTCATAAAAAGGTC 98525 Query 155930 ACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCC---TTTGACTCCTCATCGCCGTGATT 155986 | ||| | |||| || | || | ||| || || || | || | ||| Sbjct 98526 AGGAATCCATAGCCCATAAAACAAATCACGTGCACGATTAGATTC---AGTTCCATCATT 98582 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 || |||| ||||||||| || ||||||| ||| || || ||||| || ||||| Sbjct 98583 TTTTCGTAACTCTAAGAAATCGAAGATATCAGCATGCCAAGGTTCTAGATAAATGGCAAA 98642 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 | |||| || ||| || || ||||| |||||| ||| || ||||||||||| Sbjct 98643 AGCACCAGGTCTTTTGTTGCCTCCTTGATCAACATACTTAGCGGTATTATTGAAGACCTG 98702 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 | |||||| | || ||||| ||| | ||||| ||||| |||| || ||| | | Sbjct 98703 CAACATAGGGACAAGTCCATTTGAAATTCCATTAGTTCCATTAATA-GCTGACC-CCTTA 98760 Query 156164 GC---GA-ACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219 || || ||| ||| | || | ||||| ||||||| |||| ||||| || | Sbjct 98761 GCTCTGATACA--ATGGACATTCAAGCCAATTCCACCTGCAGATTTTGAAATCAATGCAC 98818 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 ||| | || | |||||| |||| ||| |||||| ||| | || | | ||| Sbjct 98819 ATTGAGACAAGGTGTCGAAAATTCCTTTAATCGAATCAGAAGACATAGTCAGCAAAAAGC 98878 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | ||| | ||||||| |||||| |||||||| || || || || || ||| ||| Sbjct 98879 ATGAAGACAGTTGAGGTGTACATGTTCCGGCGTTGAAAAGAGTGGGAGTGGCGTGAGTAA 98938 Query 156340 AATACTTATTAGACATATAATCGTATGTCTC 156370 | | || | |||||| ||| ||| || || Sbjct 98939 ACCATTTCTCAGACATCAAATTGTAGGTTTC 98969 >seq59 Length=223402 Score = 100 bits (110), Expect = 8e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 289020 CCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCT 289079 ||||||| | || || |||||||||||||||||||| | | ||| |||||||| | ||| Sbjct 3451 CCTTTTTCTTCCGACGGCATCAATTTCGTCAATGAACAAAATACATGGAGAATTCTTTCT 3510 Query 289080 CGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 || || ||||| | |||||||| | | || |||| |||||| |||| || | ||| Sbjct 3511 AGCCATGGCAAACATATCTCTTACTCTTGCTGGACCAACTCCAACAAACATCTCAAGAAA 3570 Query 289140 TTCAGAAGCGGATAC 289154 ||| ||| | ||||| Sbjct 3571 TTCTGAACCAGATAC 3585 >seq28 Length=450740 Score = 96.9 bits (106), Expect = 1e-14 Identities = 94/116 (81%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 252571 GCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAA 252630 || ||||| ||||||||||| || || || |||||||| |||||||||| || |||||| Sbjct 261002 GCTTGCTTACCCATAGCACTTTGATAGGTGTTTCTGGGGGACTGATTGTGATCTGGGAAA 260943 Query 252631 GGAATGCATGATGCTACA-ACACCGAAGAT-AGTGCTTGGGTGAATTTCACAGTGA 252684 |||||| || || ||| ||||||| ||| | |||| || ||||||||||| ||| Sbjct 260942 GGAATGATAGAAGC-ACATACACCGAGGATCATTGCT-GGATGAATTTCACAATGA 260889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471808718040727