Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq32 167 2e-36 seq6 134 1e-26 seq2 123 2e-23 seq30 109 5e-19 seq39 91.5 1e-13 seq108 84.2 2e-11 >seq32 Length=411647 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||| || || ||||| ||||| ||||| || ||||| |||||| | Sbjct 326062 ATGCAGATTTTCGTTAAGACTCTTACCGGGAAAACAATTACTCTTGAAGTCGAAGCCTCT 326121 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| |||||||| || || |||||| Sbjct 326122 GACACCATTGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAA 326181 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||||||||| || || |||| ||| | | | |||| || || ||| Sbjct 326182 CAACGTCTTATCTTTGCCGGAAAGCAATTGGAAGATGGGCGTACTTTGTCCGACTACAAC 326241 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| ||||| || || |||||||| ||| || | || ||||| Sbjct 326242 ATCCAAAAAGAATCTACCCTTCACTTGGTTTTGAGACTTCGTGGAGG 326288 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || || ||||||||||| || ||||| ||||| | Sbjct 325834 ATGCAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCT 325893 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| |||||||| || || |||||| Sbjct 325894 GACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAA 325953 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || |||||||| || ||||| |||| ||| |||| | | || || || ||| Sbjct 325954 CAAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAAC 326013 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| || || |||||||| Sbjct 326014 ATCCAAAAAGAATCTACCCTTCACTTGGT 326042 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | ||||| || ||||| || || || || || || || ||||| Sbjct 325559 ACAATGCAGATTTTCGTAAAAACTCTCACCGGCAAGACCATCACTCTTGAGGTTGAAGCT 325618 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | || | || || || ||||||||||| |||||||| ||||| ||| Sbjct 325619 TCTGATACCATCGATAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGAT 325678 Query 24821 CAACAACGTTTGATCTTTGCCGGGAA 24846 |||||| | ||||| ||||| || || Sbjct 325679 CAACAAAGATTGATTTTTGCAGGTAA 325704 >seq6 Length=947499 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || ||||||||||| | || || || || | Sbjct 442410 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATCT 442351 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||||||||||| ||||| || ||| Sbjct 442350 GACACCATCGATAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAA 442291 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||||||||| || || | || ||| ||||| | || || ||| Sbjct 442290 CAAAGACTTATCTTTGCCGGAAAGCAATTAGAAGATGGGAGAACTTTAAGTGACTACAAC 442231 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| || || || || ||||| ||| ||||||| ||||| Sbjct 442230 ATCCAAAAGGAGTCAACTCTTCATTTGGTCTTGAGATTGCGTGGAGG 442184 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || ||||| || || || ||||| ||||| || Sbjct 442638 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAAACCATCACCCTGGAAGTCGAAGCTTCC 442579 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| |||||||| ||||| || ||| Sbjct 442578 GACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCAA 442519 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||||||||| || || |||||||| ||||| | || || ||| Sbjct 442518 CAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAAC 442459 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| || || || || ||||| Sbjct 442458 ATCCAAAAGGAGTCAACCCTTCATTTGGT 442430 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | ||||| ||||| || || || ||||| ||||| || Sbjct 442866 ATGCAAATCTTCGTCAAGACTTTGACCGGAAAAACCATCACCCTGGAAGTCGAAGCTTCC 442807 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||||||||| |||||||| ||||| || ||| Sbjct 442806 GACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCAA 442747 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||||||||| || || |||||||| ||||| | || || ||| Sbjct 442746 CAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAAC 442687 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || |||||||| || || || || ||||| Sbjct 442686 ATCCAAAAGGAGTCAACCCTTCATTTGGT 442658 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || ||||| || || ||||| | ||||| |||||| | Sbjct 442182 ATGCAAATTTTTGTCAAAACTCTCACCGGAAAGACAATTACTTTGGAAGTGGAAGCCTCG 442123 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || || |||||||| |||||||| ||||| || || Sbjct 442122 GACACTATTGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAG 442063 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | ||||||||||| || || ||||||| | | | ||||| || ||| Sbjct 442062 CAAAGACTTATCTTTGCCGGAAAGCAATTGGAGGACGGACGTACTCTTTCAGACTACAAC 442003 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||||||||| || | || ||||| || || | || || || Sbjct 442002 ATCCAAAAGGAATCAACCTTGCATTTGGTTCTGAGACTTCGTGGTGG 441956 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || ||||||| || || || ||||||||||| | || || || || || Sbjct 443094 ATGCAAATTTTCGTTAAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATCC 443035 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || || |||||||| |||||||| ||||| || ||| Sbjct 443034 GACACCATCGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAA 442975 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | |||||||| || || || | || ||| | | | | || || || || Sbjct 442974 CAAAGACTTATCTTTGCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACAAT 442915 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || ||||| || || |||||||| Sbjct 442914 ATCCAGAAAGAATCAACTCTCCACTTGGT 442886 >seq2 Length=2086053 Score = 123 bits (136), Expect = 2e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||||||||| ||||| ||||| || || ||| || Sbjct 1233527 ATGCAAATTTTCGTAAAGACCCTTACCGGTAAAACAATTACCCTCGAGGTTGAGGCCTCC 1233586 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||| |||||||| |||||||| ||||| |||||| Sbjct 1233587 GACACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 1233646 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||| | |||||||||||||| || Sbjct 1233647 CAAAGATTGATCTTTGCCGGTAA 1233669 >seq30 Length=447140 Score = 109 bits (120), Expect = 5e-19 Identities = 555/871 (64%), Gaps = 23/871 (3%) Strand=Plus/Plus Query 139063 ACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTG 139122 ||||||||||| | ||| || |||| || || || || ||||| || || | Sbjct 98167 ACAAATTTGTTCAAGGCAATTGAAGCTAAATTACAAACTGCGACTTCATCAGGAGAAGAG 98226 Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 || | |||||||| | ||||||||| || ||||| || || | ||||||||| || Sbjct 98227 TACTGAACAATTTCAGTGCACAAATTAGAGCATTTGATAGTTCCAAGATTTTGTTGGTTA 98286 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242 ||||||| ||| ||||||||||||||||| || || || | || ||||| | ||| | Sbjct 98287 CTTTTTCTGTTGCAAGCATCTTTGTAAAGAATGTAGGGGTTTCCTGTTTCAATTTGACTT 98346 Query 139243 TCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTC--GTCGC 139300 || || || || | | || ||| | |||| | || | | ||| ||| Sbjct 98347 TCGGCTATCTTCTTCAAAAGAGCTCTTGCTCTGACTTGA-ACTCG-ATATTTCTTTTCGA 98404 Query 139301 GCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGAC 139360 | || || || |||| | | |||||| || || || || | | | | | Sbjct 98405 GTTCATATTTAACGTATAAGGCTTCGAATTCTTGTCCCCAGCAATCGGCCAAGCCAGGGC 98464 Query 139361 ACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGAT 139420 | | | ||||||||| || ||||| | | ||| | ||| | | |||| || || | Sbjct 98465 ATTCATTAGGACACATAAGGGACCACATGTCGTCGGATTTGGCTCTTTTCATAAAAAGGT 98524 Query 139421 CCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACC--CA-TGT 139477 | |||||||| | | | | |||||| || || ||| ||| | || || | | Sbjct 98525 CAGGAATCCATAGCCCATAAAACAAATCACGTGCACGATTAGATTCAGTTCCATCATTTT 98584 Query 139478 TACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCA 139537 | ||| | | | |||||| || | ||||| ||||| ||||| ||||| ||||| | Sbjct 98585 TTCGT---AACTCTAAGAAATCGAAGATATCAGCATGCCAAGGTTCTAGATAAATGGCAA 98641 Query 139538 TTGCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTA-CAGCATTATTGAATACG 139593 || || | | ||||| |||||||| || | | || | | ||||||||| || Sbjct 98642 AAGCACCAGGTCTTTTGTTGCCTCCTTGATCAACAT-ACTTAGCGGTATTATTGAAGACC 98700 Query 139594 CGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGG--GACTGTTGC 139651 ||||||| || | || || | | |||| || || | | || | ||| | Sbjct 98701 TGCAACATAGGGACAAGTCCATTTGAAATTCCATTAGTTCCATTAATAGCTGACCCCT-- 98758 Query 139652 GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGC 139711 ||||| || ||| ||||| | ||| ||||| || || |||| || || || | | Sbjct 98759 TAGCTCTGATACAATGGACATTCAAGCCAATTCCACCTGCAGATTTTGAAATCAATGCAC 98818 Query 139712 AATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGC 139771 | | || || ||| | || ||| | || || ||| || | || ||||| Sbjct 98819 ATTGAGACAAGGTGTCGAAAATTCCTTTAATCGAATCAGAAGACATAGTCAGCAAAAAGC 98878 Query 139772 ATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGA 139831 |||| || ||||| ||| || ||||| || ||||| ||| | ||||| || | Sbjct 98879 ATGAAGACAGTTGAGGTGTACATGTTCCGGCGTTGAAAAGAGTGGGAGTGGCGTGAGTAA 98938 Query 139832 ACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATC--CCTTCCGTG 139889 || || | |||||||| | ||| |||||||| |||| || || |||| ||| Sbjct 98939 ACCATTTCTCAGACATCAAATTGTAGGTTTCGATAGCGCCATTGATGTCATCCTT--GTG 98996 Query 139890 GATACCGACAGAGACTCGCATCAGCATATGT 139920 || || || | || ||||| | ||||||| Sbjct 98997 AATGCCAACGGCAACACGCATAATCATATGT 99027 >seq39 Length=348097 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || ||||| || ||||| || || ||||| || | Sbjct 169815 ATGCAAATCTTCGTCAAGACATTGACTGGTAAGACCATTACCCTTGAGGTAGAGGCTTCA 169874 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| || || |||||||| |||||||| ||||| |||||| Sbjct 169875 GACACTATCGAGAATGTAAAGGCTAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAA 169934 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||| | || ||||||||||| || Sbjct 169935 CAAAGATTAATCTTTGCCGGTAA 169957 >seq108 Length=67188 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 139063 ACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTG 139122 ||||||||||| | ||| || || | ||| || || || | ||| ||||| | Sbjct 6357 ACAAATTTGTTTAATGCAATAGAAGCCAAGTTACAAACGGCAATTTCATCGGGCGAAGAG 6298 Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 |||| || ||||| | |||||||| ||||| || || || | ||| ||||| ||| Sbjct 6297 TATTGTACGATTTCTGTGCACAAATTGGAGCACTTTATGGTTCCAAGATTCTGTTGGTTG 6238 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 ||||||| ||| |||||||||||| | || || || || | ||| |||| ||| Sbjct 6237 CTTTTTCTGTTGCAAGCATCTTTGAATAGGATGTAAGGCATTCCAAGCTCCATTTG 6182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894951227880