Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq6 120 2e-22 seq32 105 4e-18 >seq6 Length=947499 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | || ||||||| |||| ||| |||||| || ||||| ||||| Sbjct 442410 TTCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCAC 442469 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || | | | |||| |||| |||||||||||| ||||| |||| ||| |||||| | | Sbjct 442470 TTAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAG 442529 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || ||||||| | || | || || |||| Sbjct 442530 GGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGA 442589 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| ||||| || |||||||| || ||||| ||||| Sbjct 442590 CTTCCAGGGTGATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 442638 Score = 113 bits (124), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| | ||| |||| ||||| |||| || |||||| || ||||| ||||| Sbjct 442182 TTCCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCAC 442241 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || | | | |||| || | |||||||||||| ||||| |||| ||| |||||| | | Sbjct 442242 TTAAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAG 442301 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCC 34924 | | || || ||||| | || || ||||| || ||||||| ||| ||| Sbjct 442302 GGATTCCTTCTTTGTCTTGGATCTTAGCCTTGAC--AT--TATCGATGGTGTCAGATGCC 442357 Query 34925 TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||| || || ||||| || |||||||| || ||||||||||| Sbjct 442358 TCAACCTCCAAGGTAATAGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCAT 442410 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 ||||||| || | || ||||||| |||| ||| |||||| || ||||| ||||| Sbjct 442638 TTCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCAC 442697 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 || | | | |||| |||| |||||||||||| ||||| |||| ||| |||||| | | Sbjct 442698 TTAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAG 442757 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || |||||||| | || || ||||||| | || | || || |||| Sbjct 442758 GGATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGA 442817 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| ||||| ||||| || | ||||| || ||||| ||||| Sbjct 442818 CTTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 442866 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| |||| || | ||| ||||| || ||||| ||||| || || | || | Sbjct 441968 CTCAGAACCAAATGCAAGGTTGATTCCTTTTGGATGTTGTAGTCTGAAAGAGTACGTCCG 442027 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||| |||||||||||| ||||| |||| |||||||||| | || | || |||||| Sbjct 442028 TCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGAGGGATTCCTTCCTTG 442087 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGT 34938 || | ||||| ||||| || |||| || || ||| || || || | || Sbjct 442088 TCTTGAATTTTGGCCTTGAC--AT--TATCAATAGTGTCCGAGGCTTCCACTTCCAAAGT 442143 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||||||| ||||| || || ||||| || ||||| Sbjct 442144 AATTGTCTTTCCGGTGAGAGTTTTGACAAAAATTTGCAT 442182 >seq32 Length=411647 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| | | |||| |||| ||||| ||| || || || ||||| ||||| || Sbjct 326289 TCCTCCACGAAGTCTCAAAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGA 326230 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 | | ||| |||| |||| |||||||||||| ||||| || ||||| || ||| | || Sbjct 326229 CAAAGTACGCCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGG 326170 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | || |||||||| | || || ||||||| | || | ||| ||| ||||| Sbjct 326169 AATTCCTTCCTTGTCTTGGATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGAC 326110 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || || || || || ||||| || || |||||||| Sbjct 326109 TTCAAGAGTAATTGTTTTCCCGGTAAGAGTCTTAACGAAAATCTGCAT 326062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690930421549