Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq32 114 2e-20 seq6 109 9e-19 seq39 89.7 8e-13 >seq32 Length=411647 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || ||||||||||| |||||| |||| || ||| | | Sbjct 325835 TGCAGATTTTTGTCAAGACTTTGACAGGAAAAACTATTACTCTTGAAGTTGAAGCTTCTG 325894 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || || || || ||| || ||||| ||||| || ||||||| Sbjct 325895 ACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAAC 325954 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| || |||||||| || ||| ||||| ||| | || || || | Sbjct 325955 AAAGATTAATCTTTGCTGGAAAACAATTGGAAGATGGAAGAACCTTATCCGACTACAACA 326014 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| || | || || || | || | |||||||| Sbjct 326015 TCCAAAAAGAATCTACCCTTCACTTGGTTCTTAGACTTAGAGGAGG 326060 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| | || || || || || ||| |||| || ||| | | Sbjct 325563 TGCAGATTTTCGTAAAAACTCTCACCGGCAAGACCATCACTCTTGAGGTTGAAGCTTCTG 325622 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| || ||||| ||| || ||||| ||||| || ||||||| Sbjct 325623 ATACCATCGATAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCTCCAGATCAAC 325682 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 ||||| | |||||||||||||| Sbjct 325683 AAAGATTGATTTTTGCAGGTAA 325704 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || | || || |||||||||||| |||| || ||| | Sbjct 326063 TGCAGATTTTCGTTAAGACTCTTACCGGGAAAACAATTACTCTTGAAGTCGAAGCCTCTG 326122 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | || || ||| || || ||| || ||||| ||||| || ||||||| Sbjct 326123 ACACCATTGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAAC 326182 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || ||||| || || ||||| || ||| | || || | || || || | Sbjct 326183 AACGTCTTATCTTTGCCGGAAAGCAATTGGAAGATGGGCGTACTTTGTCCGACTACAACA 326242 Query 146212 TACAAAAAGAATCGAC 146227 | ||||||||||| || Sbjct 326243 TCCAAAAAGAATCTAC 326258 >seq6 Length=947499 Score = 109 bits (120), Expect = 9e-19 Identities = 162/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | |||||| | || |||||||| ||||| | || || || ||| | Sbjct 443093 TGCAAATTTTCGTTAAAACACTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATC-C 443035 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| || ||||| ||| || ||||| ||||| || || ||| Sbjct 443034 GACACCATCGATAATGTCAAGGCCAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAA 442975 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||| || ||||| || || |||||||| ||| | || | | || || ||| Sbjct 442974 CAAAGACTTATCTTTGCTGGAAAGCAATTAGAAGATGGCCGTACCCTCTCCGACTACAAT 442915 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || || |||||||| ||| |||| || || | || | |||||||| Sbjct 442914 ATCCAGAAAGAATCAACTCTCCACTTGGTTCTTAGACTCAGAGGAGG 442868 Score = 102 bits (112), Expect = 1e-16 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || || || |||||||| || || | || || ||| | || Sbjct 442865 TGCAAATCTTCGTCAAGACTTTGACCGGAAAAACCATCACCCTGGAAGTCGAAGCTTCCG 442806 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || ||| ||| || ||| || ||||| || || || || |||| Sbjct 442805 ACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCAAC 442746 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||| || || ||||| || ||| ||||| |||| || || || | Sbjct 442745 AAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAACA 442686 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| || || || | ||||| || | || | |||||||| Sbjct 442685 TCCAAAAGGAGTCAACCCTTCATTTGGTCCTCAGACTCAGAGGAGG 442640 Score = 100 bits (110), Expect = 4e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | || || | || |||||||| ||||| | || || || ||| Sbjct 442409 TGCAGATCTTCGTCAAGACCCTTACTGGAAAAACTATTACCTTGGAGGTTGAGGCATCT- 442351 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| || ||| || ||| |||||||| || || || || ||| Sbjct 442350 GACACCATCGATAATGTCAAGGCTAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAA 442291 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||||| || ||||| || || |||||||| ||| ||||| |||| || || || Sbjct 442290 CAAAGACTTATCTTTGCCGGAAAGCAATTAGAAGATGGGAGAACTTTAAGTGACTACAAC 442231 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || ||||| || || ||| | ||||| || || |||| | ||||| Sbjct 442230 ATCCAAAAGGAGTCAACTCTTCATTTGGTCTTGAGATTGCGTGGAGG 442184 Score = 96.9 bits (106), Expect = 5e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || |||||||| || || | || || ||| | || Sbjct 442637 TGCAAATCTTCGTCAAGACCCTTACTGGAAAAACCATCACCCTGGAAGTCGAAGCTTCCG 442578 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || ||| ||| || ||| || ||||| || || || || |||| Sbjct 442577 ACACCATCGACAACGTCAAAGCTAAGATCCAAGACAAGGAAGGAATCCCTCCAGACCAAC 442518 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||||| || ||||| || || ||||| || ||| ||||| |||| || || || | Sbjct 442517 AAAGACTTATCTTTGCCGGAAAGCAATTGGAGGATGGGAGAACTTTAAGTGACTACAACA 442458 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||| || || || | ||||| || | || | |||||||| Sbjct 442457 TCCAAAAGGAGTCAACCCTTCATTTGGTCCTCAGACTCAGAGGAGG 442412 Score = 89.7 bits (98), Expect = 8e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||| |||||||||| ||||| || | || || ||| | | Sbjct 443370 TGCAAATTTTTGTAAAAACGCTAACAGGAAAGACAATCACCTTGGAGGTTGAAGCTTCGG 443311 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| || || ||| || ||||| |||||||| || |||| Sbjct 443310 ATACGATCGACAACGTCAAAGCGAAGATTCAAGACAAGGAAGGAATTCCACCAGACCAAC 443251 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 | |||||||||||||| ||||| Sbjct 443250 AGAGACTCATTTTTGCCGGTAA 443229 >seq39 Length=348097 Score = 89.7 bits (98), Expect = 8e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||||| || || || || ||||| |||| ||||| | | Sbjct 169816 TGCAAATCTTCGTCAAGACATTGACTGGTAAGACCATTACCCTTGAGGTAGAGGCTTCAG 169875 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| | |||||||| |||||| ||| || ||||| ||||| || ||||||| Sbjct 169876 ACACTATCGAGAATGTAAAGGCTAAAATTCAAGACAAGGAAGGAATTCCTCCAGATCAAC 169935 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 ||||| | || ||||| ||||| Sbjct 169936 AAAGATTAATCTTTGCCGGTAA 169957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786161771445320