Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhabditophanes_20sp._20KR3021_20[genbank_20GCA_5F000944355.1_202014- 09-24] 471 sequences; 47,267,908 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq32 147 2e-30 seq6 98.7 8e-16 seq2 82.4 6e-11 >seq32 Length=411647 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | | || ||||| ||||| || ||||||||||| ||||| || || | Sbjct 326061 TCCTCCTCTAAGTCTAAGAACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGA 326002 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| | ||| || | |||||| |||||| | || |||||||| ||||| || || Sbjct 326001 TAAGGTTCTTCCATCTTCCAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGGGG 325942 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || || |||||||| | || ||||| | || | ||||||||| ||| || Sbjct 325941 AATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGCTTCAAC 325882 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||||||| |||||||| || || || || || ||||| ||||||||| Sbjct 325881 TTCAAGAGTAATAGTTTTTCCTGTCAAAGTCTTGACAAAAATCTGCATT 325833 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| ||||| || ||||||||||| ||||| || || | | || || ||| || Sbjct 326270 ACCAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGCCCATCTTCC 326211 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||| || || ||| | || | | ||| ||||| || ||||| || || |||||||| Sbjct 326210 AATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGG 326151 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | || |||||| | || | |||||||| ||| ||||||||||| || ||||| Sbjct 326150 ATCTTGGCTTTGACGTTGTCAATGGTGTCAGAGGCTTCGACTTCAAGAGTAATTGTTTTC 326091 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || | || ||||| || ||||||||| Sbjct 326090 CCGGTAAGAGTCTTAACGAAAATCTGCATT 326061 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | ||||||||||| ||||| || ||||| || || |||||||| | ||| Sbjct 325704 TTACCTGCAAAAATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTTG 325645 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 |||||| | || | || |||||| ||| || |||||||| || || ||||| || Sbjct 325644 GCCTTGACATTATCGATGGTATCAGAAGCTTCAACCTCAAGAGTGATGGTCTTGCCGGTG 325585 Query 29764 AAGGTTTTAACAAATATCTGCATT 29787 | ||||| || || ||||||||| Sbjct 325584 AGAGTTTTTACGAAAATCTGCATT 325561 >seq6 Length=947499 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | ||| | || ||||||||||| || || || ||||| ||||| || || Sbjct 442183 TCCTCCACGCAATCTCAAGACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCACT 442242 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || | ||| || || ||| | || | |||||| || || || || Sbjct 442243 TAAAGTTCTCCCATCTTCTAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGG 442302 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| | || |||||| | || | |||||||| || || Sbjct 442303 GATTCCTTCTTTGTCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGATGCCTCAAC 442362 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | || |||||||| ||||| | ||| || || || ||||||||| Sbjct 442363 CTCCAAGGTAATAGTTTTTCCAGTAAGGGTCTTGACGAAGATCTGCATT 442411 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | | || ||||||||||| || || || ||||| ||||| || || Sbjct 442411 TCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACT 442470 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || | ||| || || ||| | || | |||||| || || || || Sbjct 442471 TAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGG 442530 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | || |||||| | || | ||||| ||| ||| || Sbjct 442531 GATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGAC 442590 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| || || || ||||| ||||| | ||| || || || || |||||| Sbjct 442591 TTCCAGGGTGATGGTTTTTCCAGTAAGGGTCTTGACGAAGATTTGCATT 442639 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | | || ||||||||||| || || || ||||| ||||| || || Sbjct 442639 TCCTCCTCTGAGTCTGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCACT 442698 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || | ||| || || ||| | || | |||||| || || || || Sbjct 442699 TAAAGTTCTCCCATCCTCCAATTGCTTTCCGGCAAAGATAAGTCTTTGTTGGTCTGGAGG 442758 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | || |||||| | || | ||||| ||| ||| || Sbjct 442759 GATTCCTTCCTTGTCTTGGATCTTAGCTTTGACGTTGTCGATGGTGTCGGAAGCTTCGAC 442818 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| || || || ||||| || || || || || || || || |||||| Sbjct 442819 TTCCAGGGTGATGGTTTTTCCGGTCAAAGTCTTGACGAAGATTTGCATT 442867 >seq2 Length=2086053 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | ||||||||||| ||||| || ||||| || || |||||||| ||| || Sbjct 1233669 TTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGAATTCCTTCCTTGTCTTG-AATCTT 1233611 Query 29704 TG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | ||||||| |||| | ||||| || || || || || || || ||||| || || Sbjct 1233610 GGCTTTGACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTAATTGTTTTACCGGT 1233551 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | ||| || || || || ||||| Sbjct 1233550 AAGGGTCTTTACGAAAATTTGCAT 1233527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385216988721411